Evidence map›Paper›PMID 39732665›Full record

ArticleBMC microbiology2024

The transcription factor YbdO attenuates the pathogenicity of avian pathogenic Escherichia coli by regulating oxidative stress response.

Lumin Yu, Yuzhong Zhao, Shanpeng Zhang, Linan Xu, Su Tang, Yuxuan Geng, Cong Xue, Xinglin Zhang

Abstract read
In one paragraph

Article in BMC microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Characterization of defensome genes and mobile genetic Elements in different types of pasture soil agroecosystems from the Brazilian Amazon.International microbiology : the official journal of the Spanish Society for Microbiology · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Lumin YuCollege of Agriculture and Forestry, Linyi University, Linyi, 276005, Shandong, China. yulumin@lyu.edu.cn.
Yuzhong ZhaoCollege of Agriculture and Forestry, Linyi University, Linyi, 276005, Shandong, China.
Shanpeng ZhangCollege of Agriculture and Forestry, Linyi University, Linyi, 276005, Shandong, China.
Linan XuCollege of Agriculture and Forestry, Linyi University, Linyi, 276005, Shandong, China.
Su TangCollege of Agriculture and Forestry, Linyi University, Linyi, 276005, Shandong, China.
Yuxuan GengCollege of Agriculture and Forestry, Linyi University, Linyi, 276005, Shandong, China.
Cong XueCollege of Agriculture and Forestry, Linyi University, Linyi, 276005, Shandong, China.
Xinglin ZhangCollege of Agriculture and Forestry, Linyi University, Linyi, 276005, Shandong, China. zhangxinglin@lyu.edu.cn.

Funding

aishan Scholars Program of Shandong Province, China ts20190955Key Research and Development Program of Linyi City 2021026National Natural Science Foundation of China 32202810Natural Science Foundation of Shandong Province, China ZR2022QC115Project of Shandong Province Higher Educational Outstanding Youth Innovation Team 2019KJF011
6 · The paper itself

Abstract

Avian pathogenic Escherichia coli (APEC) is a significant pathogen infecting poultry that is responsible for high mortality, morbidity and severe economic losses to the poultry industry globally, posing a substantial risk to the health of poultry. APEC encounters reactive oxygen species (ROS) during the infection process and thus has evolved antioxidant defense mechanisms to protect against oxidative damage. The imbalance of ROS production and antioxidant defenses is known as oxidative stress, which results in oxidative damage to proteins, lipids and DNA, and even bacterial cell death. APEC uses transcription factors (TFs) to handle oxidative stress. While many TFs in E. coli have been well characterized, the mechanism of the YbdO TF on protecting against oxidative damage and regulating the virulence and pathogenicity of APEC has not been clarified. Here we focus on the regulatory mechanism of YbdO on the pathogenicity of APEC. The results from this study showed that YbdO attenuated the pathogenicity of APEC in chicks infection models by inhibiting the expression of virulence genes fepG and ycgV using quantitative real-time reverse transcription PCR (RT-qPCR) experiments. The electrophoretic mobility shift assays (EMSA) confirmed that YbdO specifically bound to the promoters of fepG and ycgV. Additionally, YbdO increases H

Indexed as

ChickensEscherichia coliEscherichia coli InfectionsEscherichia coli ProteinsGene Expression Regulation, BacterialOxidative StressPoultry DiseasesTranscription FactorsAnimalsPromoter Regions, GeneticReactive Oxygen SpeciesVirulenceVirulence FactorsEscherichia coli ProteinsReactive Oxygen SpeciesTranscription FactorsVirulence FactorsAntioxidant defensesAvian pathogenic Escherichia coliOxidative stressPathogenicityROSYbdO

Identifiers

PMID39732665
PMCPMC11681634

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.