Evidence mapPaperPMID 39732836Full record

ArticleScientific reports2024

Bioinformatics identifies key genes and potential therapeutic targets in the pathological mechanism of oxidative stress in Randall's plaque.

Fan Li, Ke Shi, Songchao Li, Yan Wei, Zhankui Jia

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Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

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0cells of the map it votes in
1citing papers in PubMed
field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

5 authors.

Fan Li *Urology, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450000, China.
Ke Shi *Neurology, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450000, China.
Songchao LiUrology, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450000, China.
Yan WeiUrology, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450000, China.
Zhankui JiaUrology, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450000, China. jiazhankui@126.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Randall's plaque (RP) is recognized as a precursor lesion for kidney stones, with its formation and progression potentially linked to oxidative stress. Previous studies have provided limited insights into the underlying mechanisms of RP, failing to fully elucidate its molecular pathways. To investigate the relationship between oxidative stress and RP, we employed bioinformatics approaches to identify key genes, predict associated pathways and drug molecules, analyze variations in immune cell populations, and construct diagnostic models. We initially identified three differentially expressed genes related to oxidative stress: BFSP1, LONF1, and TAF1D. These genes and their co-expressed counterparts are enriched in pathways related to oxidative phosphorylation, cellular adhesion processes, steroid hormone biosynthesis, and autophagy. Furthermore, we observed significant differences in two types of immune cells across the study groups. Ultimately, predictions from drug molecular docking suggest that BFSP1 may serve as a promising therapeutic target for RP. We propose that the formation of RP mediated by oxidative stress could be associated with BFSP1, LONF1, TAF1D along with CD56dim natural killer cells and memory B cells. Thus far, BFSP1 emerges as a pivotal therapeutic target for RP development. These findings offer new perspectives on the mechanisms underlying the pathogenesis of RP.

Indexed as

Computational BiologyOxidative StressHumansMolecular Docking SimulationBFSP1Bioinformatic analysisLONRF1Oxidative stressRandall's plaqueTAF1D

Identifiers

PMID39732836
PMCPMC11682209

What Socratic holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.