Evidence map›Paper›PMID 39738207›Full record

ArticleNature communications2024

Rapid lightsheet fluorescence imaging of whole Drosophila brains at nanoscale resolution by potassium acrylate-based expansion microscopy.

Xuejiao Tian, Tzu-Yang Lin, Po-Ting Lin, Min-Ju Tsai, Hsin Chen, Wen-Jie Chen, Chia-Ming Lee, Chiao-Hui Tu, Jui-Cheng Hsu, Tung-Han Hsieh and 9 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Neurophotonics · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Xuejiao Tian *Research Center for Applied Sciences, Academia Sinica, Taipei, 11529, Taiwan.ORCID 0000-0002-8044-0684
Tzu-Yang Lin *Institute of Cellular and Organismic Biology, Academia Sinica, Taipei, 11529, Taiwan.ORCID 0000-0002-1968-177X
Po-Ting LinResearch Center for Applied Sciences, Academia Sinica, Taipei, 11529, Taiwan.
Min-Ju TsaiResearch Center for Applied Sciences, Academia Sinica, Taipei, 11529, Taiwan.
Hsin ChenResearch Center for Applied Sciences, Academia Sinica, Taipei, 11529, Taiwan.
Wen-Jie ChenTaiwan International Graduate Program in Interdisciplinary Neuroscience, National Cheng Kung University and Academia Sinica, Taipei, 11529, Taiwan.
Chia-Ming LeeResearch Center for Applied Sciences, Academia Sinica, Taipei, 11529, Taiwan.
Chiao-Hui TuResearch Center for Applied Sciences, Academia Sinica, Taipei, 11529, Taiwan.
Jui-Cheng HsuResearch Center for Applied Sciences, Academia Sinica, Taipei, 11529, Taiwan.ORCID 0009-0009-2999-1294
Tung-Han HsiehResearch Center for Applied Sciences, Academia Sinica, Taipei, 11529, Taiwan.
Yi-Chung TungResearch Center for Applied Sciences, Academia Sinica, Taipei, 11529, Taiwan.ORCID 0000-0002-6170-2992
Chien-Kai WangDepartment of Mechanical Engineering, National Taiwan University, Taipei, 106319, Taiwan.
Suewei LinInstitute of Molecular Biology, Academia Sinica, Taipei, 11529, Taiwan.ORCID 0000-0001-7079-7818
Li-An ChuDepartment of Biomedical Engineering and Environmental Sciences, National Tsing Hua University, Hsinchu, Taiwan.ORCID 0000-0002-4092-3024
Fan-Gang TsengResearch Center for Applied Sciences, Academia Sinica, Taipei, 11529, Taiwan.ORCID 0000-0001-7654-6905
Yi-Ping HsuehInstitute of Molecular Biology, Academia Sinica, Taipei, 11529, Taiwan.ORCID 0000-0002-0866-6275
Chi-Hon LeeInstitute of Cellular and Organismic Biology, Academia Sinica, Taipei, 11529, Taiwan.ORCID 0000-0002-6138-711X
Peilin ChenResearch Center for Applied Sciences, Academia Sinica, Taipei, 11529, Taiwan.ORCID 0000-0003-4154-0487
Bi-Chang ChenResearch Center for Applied Sciences, Academia Sinica, Taipei, 11529, Taiwan. chenb10@gate.sinica.edu.tw.ORCID 0000-0002-1876-7432

Funding

Academia Sinica AS-iMATE-110-43Ministry of Science and Technology, Taiwan (Ministry of Science and Technology of Taiwan) NSTC112-2311-B-001-034-MY2
6 · The paper itself

Abstract

Taking advantage of the good mechanical strength of expanded Drosophila brains and to tackle their relatively large size that can complicate imaging, we apply potassium (poly)acrylate-based hydrogels for expansion microscopy (ExM), resulting in a 40x plus increased resolution of transgenic fluorescent proteins preserved by glutaraldehyde fixation in the nervous system. Large-volume ExM is realized by using an axicon-based Bessel lightsheet microscope, featuring gentle multi-color fluorophore excitation and intrinsic optical sectioning capability, enabling visualization of Tm5a neurites and L3 lamina neurons with photoreceptors in the optic lobe. We also image nanometer-sized dopaminergic neurons across the same intact iteratively expanded Drosophila brain, enabling us to measure the 3D expansion ratio. Here we show that at a tile scanning speed of ~1 min/mm

Indexed as

BrainAcrylatesAnimalsAnimals, Genetically ModifiedDopaminergic NeuronsDrosophilaDrosophila melanogasterDrosophila ProteinsHydrogelsMicroscopy, FluorescenceMitochondriaOptical ImagingPotassiumAcrylatesDrosophila ProteinsHydrogelsPotassium

Identifiers

PMID39738207
PMCPMC11685761

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.