Evidence map›Paper›PMID 39739365›Full record

ArticleTropical medicine & international health : TM & IH2025

TaqMan Array Card real-time polymerase chain reaction panel to detect pathogens in whole blood of febrile inpatients in northern Tanzania, 2016-2019.

James S Ngocho, Jie Liu, Nathaniel H Kalengo, Asia H Kipengele, Athanasia Maro, Buliga Mujage, Ndealilia Senyael, Jean Gratz, Kajiru G Kilonzo, Grace Kinabo and 14 more

Abstract read
In one paragraph

Article in Tropical medicine & international health : TM & IH, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Measles Without Rash During Acute Febrile Illness Surveillance in Tanzania, 2023-2024.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2026
    Article
  3. Article
  4. Multi-Pathogen Surveillance of Acute Febrile Illness in Nigeria Using TaqMan Array Cards: Implementation Successes and Lessons Learned From the SAFIAN Study.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

James S NgochoKilimanjaro Christian Medical Centre, Moshi, Tanzania.
Jie LiuSchool of Public Health, Qingdao University, Qingdao, China.
Nathaniel H KalengoKilimanjaro Christian Medical Centre, Moshi, Tanzania.
Asia H KipengeleKilimanjaro Christian Medical Centre, Moshi, Tanzania.
Athanasia MaroKilimanjaro Clinical Research Institute, Moshi, Tanzania.
Buliga MujageKilimanjaro Clinical Research Institute, Moshi, Tanzania.
Ndealilia SenyaelKilimanjaro Clinical Research Institute, Moshi, Tanzania.
Jean GratzDivision of Infectious Diseases and International Health, Department of Medicine, University of Virginia, Charlottesville, Virginia, USA.
Kajiru G KilonzoKilimanjaro Christian Medical Centre, Moshi, Tanzania.
Grace KinaboKilimanjaro Christian Medical Centre, Moshi, Tanzania.
Bingileki F LwezaulaMawenzi Regional Referral Hospital, Moshi, Tanzania.
Furaha LyamuyaKilimanjaro Christian Medical Centre, Moshi, Tanzania.
Annette MaranduKilimanjaro Christian Medical Centre, Moshi, Tanzania.
Ronald MbwasiKilimanjaro Christian Medical Centre, Moshi, Tanzania.
Blandina T MmbagaKilimanjaro Christian Medical Centre, Moshi, Tanzania.
Calvin MoshaMawenzi Regional Referral Hospital, Moshi, Tanzania.
Manuela CarugatiDuke Global Health Institute, Duke University, Durham, North Carolina, USA.
Deng B MadutDuke Global Health Institute, Duke University, Durham, North Carolina, USA.
John P BonnewellDuke Global Health Institute, Duke University, Durham, North Carolina, USA.
Michael J MazeDepartment of Medicine, University of Otago, Christchurch, New Zealand.
Venance P MaroKilimanjaro Christian Medical Centre, Moshi, Tanzania.
John A CrumpKilimanjaro Christian Medical Centre, Moshi, Tanzania.
Eric R HouptDivision of Infectious Diseases and International Health, Department of Medicine, University of Virginia, Charlottesville, Virginia, USA.
Matthew P RubachKilimanjaro Christian Medical Centre, Moshi, Tanzania.

Funding

Social and Behavioral Sciences CoreP30AI064518 · NIAID · DUKE UNIVERSITY · PI Nwora Lance Okeke · 2005 to 2026
$50.5M
Vanderbilt-Emory-Cornell-Duke Global Health Fellowship Consortium-Expanding Diversity for Global Equity (EDGE)D43TW009337 · FIC · VANDERBILT UNIVERSITY MEDICAL CENTER · PI ALIYU, MUKTAR HASSAN, HEIMBURGER, DOUGLAS CORBETT · 2017 to 2021
$6.3M
Vanderbilt-Emory-Cornell-Duke Consortium for Global Health Fellows (VECDor)R25TW009337 · FIC · VANDERBILT UNIVERSITY MEDICAL CENTER · PI HEIMBURGER, DOUGLAS CORBETT, VERMUND, STEN H. · 2012 to 2016
$6.3M
Investigating Febrile Deaths in Tanzania (INDITe)R01AI121378 · NIAID · DUKE UNIVERSITY · PI RUBACH, MATTHEW P · 2016 to 2020
$2.7M
Viral Zoonoses and Severe Febrile Illness in Northern TanzaniaK23AI116869 · NIAID · DUKE UNIVERSITY · PI RUBACH, MATTHEW P · 2016 to 2020
$896k
FIC NIH HHS D43 TW009337FIC NIH HHS R25 TW009337NIAID NIH HHS K23 AI116869NIAID NIH HHS P30 AI064518NIAID NIH HHS R01 AI121378US National Institutes of Health K23AI116869Vanderbilt-Emory-Cornell-Duke Consortium for Global Health Fellows (VECDor).
6 · The paper itself

Abstract

backgroundAcute febrile illness is a common reason for seeking healthcare in low- and middle-income countries. We describe the diagnostic utility of a TaqMan Array Card (TAC) real-time polymerase chain reaction (PCR) panel for pathogen detection in paediatric and adult inpatients admitted with febrile illness.

methodsIn this prospective cohort study, we screened medical admissions for a tympanic temperature ≥38.0°C or reported fever within 72 h and used a PCR panel to detect pathogens, including bacteria, viruses, fungi and protozoa, in 697 participants. We compared PCR results to conventional diagnostic methods and considered PCR detections as the cause of fever, except for Plasmodium spp. and Schistosoma spp. Participants for PCR testing was consecutively selected from the end of enrolment.

resultsOf 1132 participants enrolled in the cohort, 697 (61.6%) were tested by PCR. Median (IQR) age was 29.6 (4.6-46.4) years. Three hundred seventy-eight (54.2%) were male. The PCR method improved illness identification, increasing diagnostic yield from 73 (10.5%) by conventional methods to 124 (17.8%) of 697 participants. PCR detections included four viral pathogens: dengue (n = 1), enterovirus (n = 7), measles (n = 1) and Rift Valley Fever Virus (RVFV) (n = 3). Forty-six bacterial pathogens were detected in 44 (6.3%) participants, including fastidious bacteria such as Bartonella spp. (n = 2), Brucella spp. (n = 3), Coxiella burnetii (n = 2), Leptospira spp. (n = 1), M. tuberculosis (n = 7) and Rickettsia spp. (n = 9).

conclusionThe PCR panel improved pathogen detection in febrile inpatients, providing clinically actionable results for fastidious bacteria and epidemiologically relevant findings like RVFV detections, when combined with conventional methods.

Indexed as

FeverReal-Time Polymerase Chain ReactionAdolescentAdultChildChild, PreschoolFemaleHumansInpatientsMaleMiddle AgedProspective StudiesTanzaniaYoung Adultaetiologyfebrile illnessTanzaniaTaqMan Array Card

Identifiers

PMID39739365
PMCPMC12124736

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.