Evidence map›Paper›PMID 39739899›Full record

ArticlePloS one2024

A data-driven approach to establishing cell motility patterns as predictors of macrophage subtypes and their relation to cell morphology.

Manasa Kesapragada, Yao-Hui Sun, Kan Zhu, Cynthia Recendez, Daniel Fregoso, Hsin-Ya Yang, Marco Rolandi, Rivkah Isseroff, Min Zhao, Marcella Gomez

Erratum issuedAbstract read
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Manasa KesapragadaDepartment of Applied Mathematics, University of California, Santa Cruz, Santa Cruz, CA, United States of America.
Yao-Hui SunDepartment of Ophthalmology & Vision Science, School of Medicine, University of California, Davis, Sacramento, CA, United States of America.
Kan ZhuDepartment of Ophthalmology & Vision Science, School of Medicine, University of California, Davis, Sacramento, CA, United States of America.
Cynthia RecendezDepartment of Ophthalmology & Vision Science, School of Medicine, University of California, Davis, Sacramento, CA, United States of America.
Daniel FregosoDepartment of Dermatology, School of Medicine, University of California, Davis, Sacramento, CA, United States of America.
Hsin-Ya YangDepartment of Dermatology, School of Medicine, University of California, Davis, Sacramento, CA, United States of America.
Marco RolandiDepartment of Electrical and Computer Engineering, University of California, Santa Cruz, Santa Cruz, CA, United States of America.
Rivkah IsseroffDepartment of Dermatology, School of Medicine, University of California, Davis, Sacramento, CA, United States of America.
Min ZhaoDepartment of Ophthalmology & Vision Science, School of Medicine, University of California, Davis, Sacramento, CA, United States of America.
Marcella GomezDepartment of Applied Mathematics, University of California, Santa Cruz, Santa Cruz, CA, United States of America.ORCID 0000-0001-9709-5015

Funding

Bioelectricity in Gut Epithelium Drives Pathogenic Bacterial TargetingR21AI156409 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI SUN, YAOHUI, ZHAO, MIN · 2021 to 2022
$432k
NIAID NIH HHS R21 AI156409
6 · The paper itself

Abstract

The motility of macrophages in response to microenvironment stimuli is a hallmark of innate immunity, where macrophages play pro-inflammatory or pro-reparatory roles depending on their activation status during wound healing. Cell size and shape have been informative in defining macrophage subtypes. Studies show pro and anti-inflammatory macrophages exhibit distinct migratory behaviors, in vitro, in 3D and in vivo but this link has not been rigorously studied. We apply both morphology and motility-based image processing approaches to analyze live cell images consisting of macrophage phenotypes. Macrophage subtypes are differentiated from primary murine bone marrow derived macrophages using a potent lipopolysaccharide (LPS) or cytokine interleukin-4 (IL-4). We show that morphology is tightly linked to motility, which leads to our hypothesis that motility analysis could be used alone or in conjunction with morphological features for improved prediction of macrophage subtypes. We train a support vector machine (SVM) classifier to predict macrophage subtypes based on morphology alone, motility alone, and both morphology and motility combined. We show that motility has comparable predictive capabilities as morphology. However, using both measures can enhance predictive capabilities. While motility and morphological features can be individually ambiguous identifiers, together they provide significantly improved prediction accuracies (75%) from a training dataset of 1000 cells tracked over time using only phase contrast time-lapse microscopy. Thus, the approach combining cell motility and cell morphology information can lead to methods that accurately assess functionally diverse macrophage phenotypes quickly and efficiently. This can support the development of cost efficient and high through-put methods for screening biochemicals targeting macrophage polarization.

Indexed as

Cell MovementMacrophagesSupport Vector MachineAnimalsCell DifferentiationCell ShapeImage Processing, Computer-AssistedInterleukin-4LipopolysaccharidesMiceMice, Inbred C57BLInterleukin-4Lipopolysaccharides

Identifiers

PMID39739899
PMCPMC11687909

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.