ArticleScientific data2024
Chromosome-level genome assembly and annotation of Barbel chub Squaliobarbus curriculus.
Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
2 citing papers in PubMed.
- Design and Evaluation of aFoods (Basel, Switzerland) · 2025Article
- Chromosome-level genome assembly and annotation of Barbel chub Squaliobarbus curriculus.Scientific data · 2024Article
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Authors and funding
6 authors.
Funding
Abstract
The barbel chub Squaliobarbus curriculus, is an economically important freshwater fish in China. The fishery production of the wild populations has declined dramatically, making the development of aquaculture urgently needed. However, the lack of high-quality genome has impeded its artificial breeding and genetic breeding. Herein, we present a chromosome-level genome assembly for S. curriculus by combining HiFi sequencing, Hi-C sequencing, Iso-seq and short-reads RNA-seq data. This assembly was 910.27 Mb in size, with a contig N50 length of 34.70 Mb. 99.50% of the assembled sequences were placed onto 24 chromosomes supported by Hi-C contact map. Using Iso-seq and short-reads RNA-seq data, we identified 28,329 protein-coding genes based on three prediction methods. Of these genes, 27,207 genes (96.04%) were functionally annotated to at least one of the six commonly used databases. Additionally, we annotated 2,041 miRNAs, 16,426 tRNAs, 5,488 rRNAs and 1,536 snRNAs in the S. curriculus genome. Overall, the chromosome-level genome of S. curriculus will provide valuable genomic resources for genetic breeding, population genomics, sex-related marker identifications, and other future studies.
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Registered trials
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