Evidence map›Paper›PMID 39744954›Full record

ArticleThe Journal of clinical investigation2025

ATRX silences Cartpt expression in osteoblastic cells during skeletal development.

Yi-Ting Chen, Ming-Ming Jiang, Carolina Leynes, Mary Adeyeye, Camilla F Majano, Barakat Ibrahim, Urszula Polak, George Hung, Zixue Jin, Denise G Lanza and 8 more

Abstract read
In one paragraph

Article in The Journal of clinical investigation, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Alternative Lengthening of Telomeres: The Need forInternational journal of molecular sciences · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Yi-Ting ChenIntegrative Molecular and Biomedical Sciences Program and.
Ming-Ming JiangDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Carolina LeynesDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Mary AdeyeyeDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Camilla F MajanoDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Barakat IbrahimDepartment of BioSciences, Rice University, Houston, Texas, USA.
Urszula PolakDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
George HungDepartment of BioSciences, Rice University, Houston, Texas, USA.
Zixue JinDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Denise G LanzaDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Lan LiaoDepartment of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas, USA.
Brian DawsonDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Yuqing Chen-EvensonDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Oscar E RuizDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Richard J GibbonsMRC Molecular Hematology Unit, Weatherall Institute of Molecular Medicine, University of Oxford, John Radcliffe Hospital, Oxford, United Kingdom.
Jason D HeaneyDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Yangjin BaeDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Brendan LeeDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Suzanne AW Fuqua · 2007 to 2026
$73.9M
Supporting Cancer Research as a Core-based Scientist by Providing Comprehensive Genetically Engineered Rodent Model ServicesR50CA283804 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Lan Liao · 2024 to 2026
$430k
NCI NIH HHS P30 CA125123NCI NIH HHS R50 CA283804
6 · The paper itself

Abstract

ATP-dependent chromatin remodeling protein ATRX is an essential regulator involved in maintenance of DNA structure and chromatin state and regulation of gene expression during development. ATRX was originally identified as the monogenic cause of X-linked α-thalassemia mental retardation (ATR-X) syndrome. Affected individuals display a variety of developmental abnormalities and skeletal deformities. Studies from others investigated the role of ATRX in skeletal development by tissue-specific Atrx knockout. However, the impact of ATRX during early skeletal development has not been examined. Using preosteoblast-specific Atrx conditional knockout mice, we observed increased trabecular bone mass and decreased osteoclast number in bone. In vitro coculture of Atrx conditional knockout bone marrow stromal cells (BMSCs) with WT splenocytes showed impaired osteoclast differentiation. Additionally, Atrx deletion was associated with decreased receptor activator of nuclear factor κ-B ligand (Rankl)/ osteoprotegerin (Opg) expression ratio in BMSCs. Notably, Atrx-deficient osteolineage cells expressed high levels of the neuropeptide cocaine- and amphetamine-regulated transcript prepropeptide (Cartpt). Mechanistically, ATRX suppresses Cartpt transcription by binding to the promoter, which is otherwise poised for Cartpt expression by RUNX2 binding to the distal enhancer. Finally, Cartpt silencing in Atrx conditional knockout BMSCs rescued the molecular phenotype by increasing the Rankl/Opg expression ratio. Together, our data show a potent repressor function of ATRX in restricting Cartpt expression during skeletal development.

Indexed as

DNA HelicasesMice, KnockoutNerve Tissue ProteinsNuclear ProteinsOsteoblastsRANK LigandX-linked Nuclear Proteinalpha-ThalassemiaAnimalsBone DevelopmentCell DifferentiationGene Expression Regulation, DevelopmentalMesenchymal Stem CellsMiceOsteoclastsOsteoprotegerinAtrx protein, mouseDNA HelicasesNerve Tissue ProteinsNuclear ProteinsOsteoprotegerinRANK LigandTnfrsf11b protein, mouseTnfsf11 protein, mouseX-linked Nuclear ProteinBone biologyBone development

Identifiers

PMID39744954
PMCPMC11684799

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.