Evidence map›Paper›PMID 39746998›Full record

ArticleNature communications2025

Single-cell data reveal heterogeneity of investment in ribosomes across a bacterial population.

Antrea Pavlou, Eugenio Cinquemani, Corinne Pinel, Nils Giordano, Van Melle-Gateau Mathilde, Irina Mihalcescu, Johannes Geiselmann, Hidde de Jong

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Antrea PavlouUniv. Grenoble Alpes, Inria, Grenoble, France.
Eugenio CinquemaniUniv. Grenoble Alpes, Inria, Grenoble, France.ORCID http://orcid.org/0000-0003-3353-6525
Corinne PinelUniv. Grenoble Alpes, Inria, Grenoble, France.
Nils GiordanoNantes Université, INSERM, CNRS, Université d'Angers, CRCI2NA, Nantes, France.ORCID http://orcid.org/0000-0003-2549-6631
Van Melle-Gateau MathildeUniv. Grenoble Alpes, CNRS, LIPhy, Grenoble, France.
Irina MihalcescuUniv. Grenoble Alpes, CNRS, LIPhy, Grenoble, France.ORCID http://orcid.org/0000-0002-8762-8241
Johannes Geiselmann *Univ. Grenoble Alpes, Inria, Grenoble, France. hans.geiselmann@univ-grenoble-alpes.fr.ORCID http://orcid.org/0000-0002-1329-7558
Hidde de Jong *Univ. Grenoble Alpes, Inria, Grenoble, France. hidde.de-jong@inria.fr.ORCID http://orcid.org/0000-0002-2226-650X

Funding

Agence Nationale de la Recherche (French National Research Agency) ANR-17-CE40-0024
6 · The paper itself

Abstract

Ribosomes are responsible for the synthesis of proteins, the major component of cellular biomass. Classical experiments have established a linear relationship between the fraction of resources invested in ribosomal proteins and the rate of balanced growth of a microbial population. Very little is known, however, about how the investment in ribosomes varies over individual cells in a population. We therefore extended the study of ribosomal resource allocation from populations to single cells, using a combination of time-lapse fluorescence microscopy and statistical inference. We found a large variability of ribosome concentrations and growth rates in conditions of balanced growth of the model bacterium Escherichia coli in a given medium, which cannot be accounted for by the population-level growth law. A large variability in the allocation of resources to ribosomes was also found during the transition of the bacteria from a poor to a rich growth medium. While some cells immediately adapt their ribosome synthesis rate to the new environment, others do so only gradually. Our results thus reveal a range of strategies for investing resources in the molecular machines at the heart of cellular self-replication. This raises the fundamental question whether the observed variability is an intrinsic consequence of the stochastic nature of the underlying biochemical processes or whether it improves the fitness of Escherichia coli in its natural environment.

Indexed as

Escherichia coliRibosomesMicroscopy, FluorescenceRibosomal ProteinsSingle-Cell AnalysisRibosomal Proteins

Identifiers

PMID39746998
PMCPMC11695989

What Socratic holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.