ArticleNature communications2025
The giant genome of lily provides insights into the hybridization of cultivated lilies.
Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed.
- Genome-wide analysis of the HSF gene family in lily and functional characterization of LdHSFC1 under heat stress.Plant cell reports · 2026Article
- Tandem duplication underlies diversification of the gymnosperm-specific TPS-d subfamily.Horticulture research · 2026Article
- A chromosome-level genome assembly of Lycoris radiata reveals the evolutionary origin of Amaryllidaceae alkaloids and elucidates the complete galanthamine biosynthetic pathway.Plant communications · 2026Article
- Sarcandra glabra genome unveils functional conservation and divergence of O-methyltransferases catalyzing isofraxidin biosynthesis in angiosperms.Nature communications · 2026Article
- An efficient transformation and gene editing system for Lilium species.Journal of integrative plant biology · 2026Article
- Genome-Wide Identification of thePlants (Basel, Switzerland) · 2026Article
- Article
- The Nigella damascena genome provides insights into transposable element-driven genomic gigantism and trait evolution.Nature communications · 2026Article
- LlR3MYB-mediated flavonoid biosynthesis confers cold stress tolerance inHorticulture research · 2026Article
- Transposable Element-Mediated Structural Variation Drives Flower Colour Diversification in Camellia.Plant biotechnology journal · 2026Article
- A comprehensive review of physiological and molecular responses to stress of lilies (genusHorticulture research · 2026Article
- LC-MS-Based Screening for Colchicine and Characterization of Major Bitter Constituents in Lily.Molecules (Basel, Switzerland) · 2026Article
- LGD: a comprehensive online database of Liliales based on multi-omics data.Horticulture research · 2026Article
- Multi-Omics Analysis Provides Insights into Developmental Tepal Coloration inPlants (Basel, Switzerland) · 2026Article
- Survival at the edge: genomic vulnerability and genetic purging of a limestone cliff-endemic sky island shrub under climate change.Forestry research · 2026Article
- The hypoglycemic metabolites and potential mechanisms ofFrontiers in pharmacology · 2026Article
- Identification of genome size and heterozygosity in 510 Jujube (Frontiers in plant science · 2026Article
- Expression profiling and functional characterization of LoNCED gene in the pollen abortion of Lilium spp.BMC plant biology · 2025Article
- Biomod2 modeling for predicting the potential ecological distribution of Lilium Davidii var. Willmottiae (E. H. Wilson) Raffill.Scientific reports · 2025Article
- Comprehensive Virome Analysis of Commercial Lilies in South Korea by RT-PCR, High-Throughput Sequencing, and Phylogenetic Analyses.International journal of molecular sciences · 2025Article
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Authors and funding
25 authors.
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Abstract
Lilies are economically important monocots known for their ornamental flowers, bulbs, and large genomes. The absence of their genomic information has impeded evolutionary studies and genome-based breeding efforts. Here, we present reference genomes for Lilium sargentiae (lily, 35.66 Gb) and Gloriosa superba (flame lily, 5.09 Gb). The giant lily genome is shaped by recent long terminal repeat retroelements. Phylogenetic analysis reveals diverse, independent origins of lily cultivars. Gene families involved in sucrose and starch metabolism are significantly expanded in the lily genome. Key homologs of XTH22, SOC1, and AP1/FUL-like genes regulate the development, bud growth transition, and floral bud growth transition of lily bulbs. Colchicine biosynthetic gene clusters are identified in G. superba but are absent in L. sargentiae, highlighting independent colchicine evolution in Colchicaceae. These genomic insights enhance understanding of Liliales evolution, providing a foundation for future breeding and molecular research.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.