ArticleNature genetics2025
The highly allo-autopolyploid modern sugarcane genome and very recent allopolyploidization in Saccharum.
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Article in Nature genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.
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36 citing papers in PubMed.
- Balancing gain and diversity: Optimal contribution selection for sustainable genetic improvement in sugarcane.The plant genome · 2026Review
- Subspecies-specific metabolic gene clusters shape polyphenol dynamics for modular metabolic breeding in sugarcane.Plant communications · 2026Article
- Ancestry dosage: Decoding sugarcane sweetness.Plant communications · 2026Article
- Multitrait Evaluation of Drought Tolerance at the Seedling Stage in Advanced Backcross Germplasm Derived from Sugarcane ×Plants (Basel, Switzerland) · 2026Article
- Revisiting the Molecular Roadmap for Sugar Crops: Genome Reading, Trait Writing and Variety Redesigning.Plant biotechnology journal · 2026Review
- Decoding the Mystery of Sugarcane Genome-Based Breeding: Current Advancements, Strategies, and Future Challenges.Plant, cell & environment · 2026Review
- Article
- Allelic expression and subgenome bias influence plant height in cultivated hybrid sugarcane.aBIOTECH · 2026Article
- Heard it through the grapevine: a phased reference genome for the polyploid Kyoho grape.Plant physiology · 2026Article
- A Novel Homeobox Family Gene, ScH1-33, Promotes Tillering and Enhances Cold Tolerance in Sugarcane.Plant, cell & environment · 2026Article
- Adaptive Responses of Tropical Crops: A Multi-Scale Omics Integrated Perspective.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026Review
- NodeGWAS: Leveraging graph pangenomes for sensitive and accurate association analyses across diverse diploid and polyploid species.Plant communications · 2026Article
- Phased T2T genome of a tetraploid grapevine reveals segmental allopolyploid origin and allele-specific alternative splicing during fruit development.Plant physiology · 2026Article
- HSP101-encoding NEO-TETRAPLOID RICE FERTILITY GENE 1 regulates tapetum development through interaction with SAPK2 in polyploid rice.Journal of integrative plant biology · 2026Article
- Deciphering the mosaic genome of sugarcane cultivars through polyploid admixture inference with AdmixPoly.Genome biology · 2026Article
- Systematic analysis of the ShRZFP gene family and its association with tiller regulation in sugarcane.BMC plant biology · 2026Article
- Overexpression of the EfMYB124 gene from Erianthus fulvus enhances tolerance to low temperature and drought in Arabidopsis thaliana.BMC plant biology · 2026Article
- From n + n to 2n + n: Unconventional Chromosome Inheritance and Stable Retention of the EntirePlants (Basel, Switzerland) · 2026Article
- Article
- Somatic genome-doubling is the most parsimonious route to allopolyploidy.The New phytologist · 2026Review
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Authors and funding
39 authors.
Jisen Zhang *State Key Lab for Conservation and Utilization of Subtropical Agro-Biological Resources, Guangxi Key Lab for Sugarcane Biology, College of Agriculture, Guangxi University, Nanning, China. zjisen@126.com.ORCID 0000-0003-1041-2757
Yiying Qi *College of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, China.
Xiuting Hua *State Key Lab for Conservation and Utilization of Subtropical Agro-Biological Resources, Guangxi Key Lab for Sugarcane Biology, College of Agriculture, Guangxi University, Nanning, China.
Yongjun Wang *College of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, China.
Baiyu Wang *State Key Lab for Conservation and Utilization of Subtropical Agro-Biological Resources, Guangxi Key Lab for Sugarcane Biology, College of Agriculture, Guangxi University, Nanning, China.
Yongwen Qi *College of Agriculture and Biology, Zhongkai University of Agriculture and Engineering, Guangzhou, China.
Yumin Huang *Center for Genomics, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou, China.ORCID 0000-0002-3595-3093
Zehuai Yu *State Key Lab for Conservation and Utilization of Subtropical Agro-Biological Resources, Guangxi Key Lab for Sugarcane Biology, College of Agriculture, Guangxi University, Nanning, China.
Ruiting Gao *State Key Lab for Conservation and Utilization of Subtropical Agro-Biological Resources, Guangxi Key Lab for Sugarcane Biology, College of Agriculture, Guangxi University, Nanning, China.
Yixing ZhangCenter for Genomics, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou, China.
Tianyou WangState Key Lab for Conservation and Utilization of Subtropical Agro-Biological Resources, Guangxi Key Lab for Sugarcane Biology, College of Agriculture, Guangxi University, Nanning, China.
Yuhao WangCollege of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, China.
Jing MeiCenter for Genomics, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou, China.
Qing ZhangState Key Lab for Conservation and Utilization of Subtropical Agro-Biological Resources, Guangxi Key Lab for Sugarcane Biology, College of Agriculture, Guangxi University, Nanning, China.ORCID 0000-0002-1160-2715
Gang WangJiangsu Key Laboratory for Bioresources of Saline Soils, Yancheng Teachers University, Yancheng, China.
Haoran PanCenter for Genomics, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou, China.
Zhen LiState Key Lab for Conservation and Utilization of Subtropical Agro-Biological Resources, Guangxi Key Lab for Sugarcane Biology, College of Agriculture, Guangxi University, Nanning, China.
Shuangyu LiCollege of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, China.
Jia LiuCenter for Genomics, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou, China.
Nameng QiCollege of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, China.
Xiaoxi FengCollege of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, China.
Mingxing WuCollege of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, China.
Shuqi ChenCenter for Genomics, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou, China.
Cuicui DuCollege of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, China.
Yihan LiState Key Lab for Conservation and Utilization of Subtropical Agro-Biological Resources, Guangxi Key Lab for Sugarcane Biology, College of Agriculture, Guangxi University, Nanning, China.
Yi XuState Key Lab for Conservation and Utilization of Subtropical Agro-Biological Resources, Guangxi Key Lab for Sugarcane Biology, College of Agriculture, Guangxi University, Nanning, China.
Yaxue FangCenter for Genomics, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou, China.
Panpan MaCenter for Genomics, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou, China.
Qingyun LiCore Botanical Gardens/Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China.
Yuanchang SunCenter for Genomics, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou, China.
Xiaomin FengRice Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China.
Wei YaoState Key Lab for Conservation and Utilization of Subtropical Agro-Biological Resources, Guangxi Key Lab for Sugarcane Biology, College of Agriculture, Guangxi University, Nanning, China.ORCID 0000-0001-9919-1940
Muqing ZhangState Key Lab for Conservation and Utilization of Subtropical Agro-Biological Resources, Guangxi Key Lab for Sugarcane Biology, College of Agriculture, Guangxi University, Nanning, China.ORCID 0000-0003-3138-3422
Baoshan ChenState Key Lab for Conservation and Utilization of Subtropical Agro-Biological Resources, Guangxi Key Lab for Sugarcane Biology, College of Agriculture, Guangxi University, Nanning, China.ORCID 0000-0001-5866-7033
Xinlong LiuYunnan Key Laboratory of Sugarcane Genetic Improvement, Sugarcane Research Institute, Yunnan Academy of Agricultural Sciences, Kaiyuan, China.
Ray MingCenter for Genomics, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou, China.ORCID 0000-0002-9417-5789
Jianping WangDepartment of Agronomy, University of Florida, Gainesville, FL, USA.ORCID 0000-0002-0259-1508
Zuhu DengCollege of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, China.
Haibao TangCenter for Genomics, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou, China.ORCID 0000-0002-3460-8570
Funding
No grant is acknowledged in the PubMed record.
Abstract
Modern sugarcane, a highly allo-autopolyploid organism, has a very complex genome. In the present study, the karyotype and genome architecture of modern sugarcane were investigated, resulting in a genome assembly of 97 chromosomes (8.84 Gb). The allopolyploid genome was divided into subgenomes from Saccharum officinarum (So
Indexed as
Genome, PlantPolyploidySaccharumChromosomes, PlantEvolution, MolecularGenome-Wide Association StudyHaplotypesPlant BreedingPolymorphism, Single Nucleotide
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PMID
39753769What Socratic holds
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