Evidence map›Paper›PMID 39757138›Full record

ArticleThe plant genome2025

Identification of leaf rust resistance loci in hard winter wheat using genome-wide association mapping.

Indira Priyadarshini Lakkakula, James A Kolmer, Rajat Sharma, Paul St Amand, Amy Bernardo, Guihua Bai, Amir Ibrahim, Robert L Bowden, Brett F Carver, Jeffrey D Boehm and 1 more

Abstract read
In one paragraph

Article in The plant genome, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Identification of septoria nodorum blotch susceptibility genes in hard winter wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Article
  2. Unlocking the potential of spring wheat genetic resources: uncovering resistance sources against leaf rust and yellow rust.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Article
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  9. Genome-wide association mapping for the identification of stripe rust resistance loci in US hard winter wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Indira Priyadarshini LakkakulaDepartment of Entomology and Plant Pathology, Oklahoma State University, Stillwater, Oklahoma, USA.
James A KolmerUSDA-ARS Cereal Disease Laboratory, Saint Paul, Minnesota, USA.ORCID https://orcid.org/0000-0003-1790-202X
Rajat SharmaDepartment of Entomology and Plant Pathology, Oklahoma State University, Stillwater, Oklahoma, USA.
Paul St AmandUSDA-ARS Hard Winter Wheat Genetics Research Unit, Manhattan, Kansas, USA.
Amy BernardoUSDA-ARS Hard Winter Wheat Genetics Research Unit, Manhattan, Kansas, USA.
Guihua BaiUSDA-ARS Hard Winter Wheat Genetics Research Unit, Manhattan, Kansas, USA.ORCID https://orcid.org/0000-0002-1194-319X
Amir IbrahimDepartment of Soil and Crop Sciences, Texas A&M University, College Station, Texas, USA.
Robert L BowdenUSDA-ARS Hard Winter Wheat Genetics Research Unit, Manhattan, Kansas, USA.ORCID https://orcid.org/0000-0001-9419-6574
Brett F CarverDepartment of Plant and Soil Sciences, Oklahoma State University, Stillwater, Oklahoma, USA.
Jeffrey D BoehmUSDA-ARS Wheat, Sorghum & Forage Research Unit, Lincoln, Nebraska, USA.ORCID https://orcid.org/0000-0003-2255-5181
Meriem AounDepartment of Entomology and Plant Pathology, Oklahoma State University, Stillwater, Oklahoma, USA.ORCID https://orcid.org/0000-0001-6416-1792

Funding

National Institute of Food and Agriculture 2023-67014-39298
6 · The paper itself

Abstract

Leaf rust, caused by Puccinia triticina (Pt), is a serious constraint to wheat production. Developing resistant varieties is the best approach to managing this disease. Wheat leaf rust resistance (Lr) genes have been classified into either all-stage resistance (ASR) or adult-plant resistance (APR). The objectives of this study were to identify sources of leaf rust resistance in contemporary US hard winter wheat (HWW) and to dissect the genetic basis underlying leaf rust resistance in HWW. A panel of 732 elite HWW genotypes was evaluated for response to US Pt races at the seedling stage and at the adult plant stage in leaf rust nurseries in Oklahoma, Texas, and Kansas. Further, the panel was genotyped using multiplex restriction amplicon sequencing (MRA-Seq) and DNA markers linked to the known ASR genes Lr18, Lr19, Lr21, Lr24, Lr37, and Lr42 and APR genes Lr34, Lr46, Lr67, Lr68, Lr77, and Lr78. Single nucleotide polymorphism (SNP) markers derived from MRA-Seq, DNA markers linked to the known Lr genes, and the phenotypic data were used for genome-wide association study (GWAS) to identify markers associated with leaf rust response. Gene postulation based on leaf rust reactions, DNA markers, and GWAS suggested the presence of Lr1, Lr2a, Lr10, Lr14a, Lr16, Lr18, Lr19, Lr21, Lr24, Lr26, Lr34, Lr37, Lr39, Lr42, Lr46, Lr68, Lr77, and Lr78 in the HWW panel. The GWAS identified 59 SNPs significantly associated with leaf rust response, of which 20 were likely associated with novel resistance loci and can be used to enhance wheat leaf rust resistance.

Indexed as

Disease ResistanceGenome-Wide Association StudyPlant DiseasesPucciniaTriticumBasidiomycotaChromosome MappingGenes, PlantGenotypePolymorphism, Single Nucleotide

Identifiers

PMID39757138
PMCPMC11700927

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.