Evidence map›Paper›PMID 39757240›Full record

ArticleNature communications2025

ATG8 delipidation is not universally critical for autophagy in plants.

Yong Zou, Jonas A Ohlsson, Sanjana Holla, Igor Sabljić, Jia Xuan Leong, Florentine Ballhaus, Melanie Krebs, Karin Schumacher, Panagiotis N Moschou, Simon Stael and 4 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Emerging mechanisms of ATG8-independent non-canonical autophagy.Journal of physiology and biochemistry · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Yong Zou *Department of Molecular Sciences, Uppsala BioCenter, Swedish University of Agricultural Sciences and Linnean Center for Plant Biology, Uppsala, Sweden.
Jonas A Ohlsson *Department of Molecular Sciences, Uppsala BioCenter, Swedish University of Agricultural Sciences and Linnean Center for Plant Biology, Uppsala, Sweden.ORCID 0000-0001-8598-2899
Sanjana HollaDepartment of Molecular Sciences, Uppsala BioCenter, Swedish University of Agricultural Sciences and Linnean Center for Plant Biology, Uppsala, Sweden.
Igor SabljićDepartment of Molecular Sciences, Uppsala BioCenter, Swedish University of Agricultural Sciences and Linnean Center for Plant Biology, Uppsala, Sweden.ORCID 0000-0001-9044-2678
Jia Xuan LeongDepartment of Algal Development and Evolution, Max Planck Institute for Biology Tübingen, Tübingen, Germany.ORCID 0000-0001-6016-1445
Florentine BallhausDepartment of Molecular Sciences, Uppsala BioCenter, Swedish University of Agricultural Sciences and Linnean Center for Plant Biology, Uppsala, Sweden.ORCID 0000-0002-6496-0102
Melanie KrebsCentre for Organismal Studies (COS), Heidelberg University, Heidelberg, Germany.
Karin SchumacherCentre for Organismal Studies (COS), Heidelberg University, Heidelberg, Germany.
Panagiotis N MoschouDepartment of Molecular Sciences, Uppsala BioCenter, Swedish University of Agricultural Sciences and Linnean Center for Plant Biology, Uppsala, Sweden.
Simon StaelDepartment of Molecular Sciences, Uppsala BioCenter, Swedish University of Agricultural Sciences and Linnean Center for Plant Biology, Uppsala, Sweden.
Suayib ÜstünFaculty of Biology and Biotechnology, Ruhr-University Bochum, Bochum, Germany.ORCID 0000-0002-8049-296X
Yasin DagdasGregor Mendel Institute of Molecular Plant Biology, Austrian Academy of Sciences, Vienna, Austria.ORCID 0000-0002-9502-355X
Peter V BozhkovDepartment of Molecular Sciences, Uppsala BioCenter, Swedish University of Agricultural Sciences and Linnean Center for Plant Biology, Uppsala, Sweden.ORCID 0000-0002-8819-3884
Elena A MininaDepartment of Molecular Sciences, Uppsala BioCenter, Swedish University of Agricultural Sciences and Linnean Center for Plant Biology, Uppsala, Sweden. alena.minina@slu.se.ORCID 0000-0002-2619-1859

Funding

Austrian Science Fund (Fonds zur Förderung der Wissenschaftlichen Forschung) FWF-P34944Carl Tryggers Stiftelse för Vetenskaplig Forskning (Carl Trygger Foundation) CTS 14 326Deutsche Forschungsgemeinschaft (German Research Foundation) SFB1101 (TPA02, DFG)EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 101043370EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 101044878EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 101126019EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 Marie Skłodowska-Curie Actions (H2020 Excellent Science - Marie Skłodowska-Curie Actions) 799433Knut och Alice Wallenbergs Stiftelse (Knut and Alice Wallenberg Foundation) 2018.0026Knut och Alice Wallenbergs Stiftelse (Knut and Alice Wallenberg Foundation) 2021.0071Svenska Forskningsrådet Formas (Swedish Research Council Formas) 2021-01812Vetenskapsrådet (Swedish Research Council) 2017-00541
6 · The paper itself

Abstract

Intracellular recycling via autophagy is governed by post-translational modifications of the autophagy-related (ATG) proteins. One notable example is ATG4-dependent delipidation of ATG8, a process that plays critical but distinct roles in autophagosome formation in yeast and mammals. Here, we aim to elucidate the specific contribution of this process to autophagosome formation in species representative of evolutionarily distant green plant lineages: unicellular green alga Chlamydomonas reinhardtii, with a relatively simple set of ATG genes, and a vascular plant Arabidopsis thaliana, harboring expanded ATG gene families. Remarkably, the more complex autophagy machinery of Arabidopsis renders ATG8 delipidation entirely dispensable for the maturation of autophagosomes, autophagic flux, and related stress tolerance; whereas autophagy in Chlamydomonas strictly depends on the ATG4-mediated delipidation of ATG8. Importantly, we also demonstrate the distinct impact of different Arabidopsis ATG8 orthologs on autophagosome formation, especially prevalent under nitrogen depletion, providing new insight into potential drivers behind the expansion of the ATG8 family in higher plants. Our findings underscore the evolutionary diversification of the molecular mechanism governing the maturation of autophagosomes in eukaryotic lineages and highlight how this conserved pathway is tailored to diverse organisms.

Indexed as

ArabidopsisArabidopsis ProteinsAutophagyAutophagy-Related Protein 8 FamilyChlamydomonas reinhardtiiAutophagosomesAutophagy-Related ProteinsArabidopsis ProteinsATG8 protein, ArabidopsisAutophagy-Related Protein 8 FamilyAutophagy-Related Proteins

Identifiers

PMID39757240
PMCPMC11701075

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.