Evidence map›Paper›PMID 39765701›Full record

ArticleBiology2024

Identifying Significant SNPs of the Total Number of Piglets Born and Their Relationship with Leg Bumps in Pigs.

Siroj Bakoev, Lyubov Getmantseva, Maria Kolosova, Faridun Bakoev, Anatoly Kolosov, Elena Romanets, Varvara Shevtsova, Timofey Romanets, Yury Kolosov, Alexander Usatov

Abstract read
In one paragraph

Article in Biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Siroj BakoevBiotechnological Faculty, Don State Agrarian University, Persianovsky 346493, Russia.
Lyubov GetmantsevaBiotechnological Faculty, Don State Agrarian University, Persianovsky 346493, Russia.
Maria KolosovaBiotechnological Faculty, Don State Agrarian University, Persianovsky 346493, Russia.ORCID 0000-0003-2979-7108
Faridun BakoevBiotechnological Faculty, Don State Agrarian University, Persianovsky 346493, Russia.
Anatoly KolosovAll Russian Research Institute of Animal Breeding, Lesnye Polyany 141212, Russia.ORCID 0000-0002-6583-8942
Elena RomanetsBiotechnological Faculty, Don State Agrarian University, Persianovsky 346493, Russia.ORCID 0000-0003-2824-9564
Varvara ShevtsovaSouthern Scientific Center Russian Academy of Sciences, Rostov-on-Don 344006, Russia.ORCID 0000-0001-8046-0223
Timofey RomanetsBiotechnological Faculty, Don State Agrarian University, Persianovsky 346493, Russia.
Yury KolosovBiotechnological Faculty, Don State Agrarian University, Persianovsky 346493, Russia.ORCID 0000-0002-6826-8009
Alexander UsatovAcademy of Biology and Biotechnology Named After D.I. Ivanovsky, Southern Federal University, Rostov-on-Don 344006, Russia.

Funding

Russian Science Foundation grant № 22-76-10015
6 · The paper itself

Abstract

The aim of this study was to identify genetic variants and pathways associated with the total number of piglets born and to investigate the potential negative consequences of the intensive selection for reproductive traits, particularly the formation of bumps on the legs of pigs. We used genome-wide association analysis and methods for identifying selection signatures. As a result, 47 SNPs were identified, localized in genes that play a significant role during sow pregnancy. These genes are involved in follicle growth and development (SGC), early embryonic development (CCDC3, LRRC8C, LRFN3, TNFRSF19), endometrial receptivity and implantation (NEBL), placentation, and embryonic development (ESRRG, GHRHR, TUSC3, NBAS). Several genes are associated with disorders of the nervous system and brain development (BCL11B, CDNF, ULK4, CC2D2A, KCNK2). Additionally, six SNPs are associated with the formation of bumps on the legs of pigs. These variants include intronic variants in the CCDC3, ULK4, and MINDY4 genes, as well as intergenic variants, regulatory region variants, and variants in the exons of non-coding transcripts. The results suggest important biological pathways and genetic variants associated with sow fertility and highlight the potential negative impacts on the health and physical condition of pigs.

Indexed as

bumps of legsGWASmachine learning algorithmpigreproductionselection signaturetotal number of piglets born

Identifiers

PMID39765701
PMCPMC11673605

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.