Evidence map›Paper›PMID 39772214›Full record

ArticleViruses2024

Unique Nucleotide Polymorphism of African Swine Fever Virus Circulating in East Asia and Central Russia.

Roman Chernyshev, Ali Mazloum, Nikolay Zinyakov, Ivan Kolbin, Andrey Shotin, Fedor I Korennoy, Alexander V Sprygin, Ilya A Chvala, Alexey Igolkin

Abstract read
In one paragraph

Article in Viruses, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Roman ChernyshevFederal Centre for Animal Health, 600901 Vladimir, Russia.ORCID 0000-0003-3604-7161
Ali MazloumDepartment of Pathobiological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA.ORCID 0000-0002-5982-8393
Nikolay ZinyakovFederal Centre for Animal Health, 600901 Vladimir, Russia.ORCID 0000-0002-3015-5594
Ivan KolbinFederal Centre for Animal Health, 600901 Vladimir, Russia.
Andrey ShotinFederal Centre for Animal Health, 600901 Vladimir, Russia.ORCID 0000-0001-9884-1841
Fedor I KorennoyFederal Centre for Animal Health, 600901 Vladimir, Russia.ORCID 0000-0002-7378-3531
Alexander V SpryginFederal Centre for Animal Health, 600901 Vladimir, Russia.ORCID 0000-0001-5982-3675
Ilya A ChvalaFederal Centre for Animal Health, 600901 Vladimir, Russia.ORCID 0000-0002-1659-3256
Alexey IgolkinFederal Centre for Animal Health, 600901 Vladimir, Russia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The lack of data on the whole-genome analysis of genotype II African swine fever virus (ASFV) isolates significantly hinders our understanding of its molecular evolution, and as a result, the range of single nucleotide polymorphisms (SNPs) necessary to describe a more accurate and complete scheme of its circulation. In this regard, this study aimed to identify unique SNPs, conduct phylogenetic analysis, and determine the level of homology of isolates obtained in the period from 2019 to 2022 in the central and eastern regions of Russia. Twenty-one whole-genome sequences of genotype II ASFV isolates were assembled, analyzed, and submitted to GenBank. The isolates in eastern Russia form two clades, "Amur 2022" and "Asia". Within the latter clade, five subclusters can be distinguished, each characterized by a unique set of SNPs and indels. The isolates from the central regions of Russia (2019; 2021) form the "Center of Russia" clade, with two subclusters, "Bryansk 2021" and "Center of Russia 2021" (bootstrap confidence index = 99). The presence of the previously unique genetic variant ASFV for the Kaliningrad region in the wild boar population of the Khabarovsk region (eastern Russia; 2021) has also been confirmed.

Indexed as

African Swine FeverAfrican Swine Fever VirusGenome, ViralGenotypePhylogenyPolymorphism, Single NucleotideAnimalsAsia, EasternEvolution, MolecularRussiaSus scrofaSwineWhole Genome SequencingAfrican swine fever virusAsiagenotype IImolecular epidemiologysingle nucleotide polymorphisms

Identifiers

PMID39772214
PMCPMC11680119

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.