Evidence map›Paper›PMID 39774835›Full record

ArticleNature structural & molecular biology2025

Importance of an N-terminal structural switch in the distinction between small RNA-bound and free ARGONAUTE.

Simon Bressendorff, Ida Marie Zobbe Sjøgaard, Andreas Prestel, Vasileios Voutsinos, Martin D Jansson, Patrice Ménard, Anders H Lund, Rasmus Hartmann-Petersen, Birthe B Kragelund, Christian Poulsen and 1 more

Abstract read
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In one paragraph

Article in Nature structural & molecular biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. CSDE1 stabilizes AGO2 in embryonic stem cells.Frontiers in molecular biosciences · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Simon Bressendorff *Copenhagen Plant Science Center, Department of Biology, University of Copenhagen, Copenhagen, Denmark.ORCID http://orcid.org/0000-0002-1093-2114
Ida Marie Zobbe Sjøgaard *Copenhagen Plant Science Center, Department of Biology, University of Copenhagen, Copenhagen, Denmark.
Andreas PrestelStructural Biology and NMR Laboratory, Department of Biology, University of Copenhagen, Copenhagen, Denmark.ORCID http://orcid.org/0000-0002-5459-9608
Vasileios VoutsinosKaj Ulrik Linderstrøm-Lang Centre for Protein Science, Department of Biology, University of Copenhagen, Copenhagen, Denmark.ORCID http://orcid.org/0000-0002-0911-3648
Martin D JanssonBiotech Research and Innovation Centre, University of Copenhagen, Copenhagen, Denmark.ORCID http://orcid.org/0000-0002-6946-145X
Patrice MénardBiotech Research and Innovation Centre, University of Copenhagen, Copenhagen, Denmark.
Anders H LundBiotech Research and Innovation Centre, University of Copenhagen, Copenhagen, Denmark.ORCID http://orcid.org/0000-0002-7407-3398
Rasmus Hartmann-PetersenKaj Ulrik Linderstrøm-Lang Centre for Protein Science, Department of Biology, University of Copenhagen, Copenhagen, Denmark.ORCID http://orcid.org/0000-0002-4155-7791
Birthe B KragelundStructural Biology and NMR Laboratory, Department of Biology, University of Copenhagen, Copenhagen, Denmark.ORCID http://orcid.org/0000-0002-7454-1761
Christian PoulsenCopenhagen Plant Science Center, Department of Biology, University of Copenhagen, Copenhagen, Denmark.
Peter BrodersenCopenhagen Plant Science Center, Department of Biology, University of Copenhagen, Copenhagen, Denmark. pbrodersen@bio.ku.dk.ORCID http://orcid.org/0000-0003-1083-1150

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

ARGONAUTE (AGO) proteins bind to small non-coding RNAs to form RNA-induced silencing complexes. In the RNA-bound state, AGO is stable while RNA-free AGO turns over rapidly. Molecular features unique to RNA-free AGO that allow its specific recognition and degradation remain unknown. Here, we identify a confined, linear region in Arabidopsis AGO1 and human Ago2, the N-coil, as a structural switch with preferential accessibility in the RNA-free state. RNA-free Arabidopsis AGO1 interacts with the autophagy cargo receptor ATI1 by direct contact with specific N-coil amino acid residues whose mutation reduces the degradation rate of RNA-free AGO1 in vivo. The N-coil of human Ago2 has similar degron activity dependent on residues in positions equivalent to those required for the Arabidopsis AGO1-ATI1 interaction. These results elucidate the molecular basis for specific recognition and degradation of the RNA-free state of eukaryotic AGO proteins.

Indexed as

ArabidopsisArabidopsis ProteinsArgonaute ProteinsRNA, Small UntranslatedHumansModels, MolecularProtein BindingAGO1 protein, ArabidopsisAGO2 protein, humanArabidopsis Proteinsargonaute 2 protein, ArabidopsisArgonaute ProteinsRNA, Small Untranslated

Identifiers

PMID39774835

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.