Evidence map›Paper›PMID 39788982›Full record

ArticleNature communications2025

The Psu protein of phage satellite P4 inhibits transcription termination factor ρ by forced hyper-oligomerization.

Daniela Gjorgjevikj, Naveen Kumar, Bing Wang, Tarek Hilal, Nelly Said, Bernhard Loll, Irina Artsimovitch, Ranjan Sen, Markus C Wahl

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Daniela GjorgjevikjLaboratory of Structural Biochemistry, Institute of Chemistry and Biochemistry, Freie Universität Berlin, Berlin, Germany.ORCID http://orcid.org/0000-0002-9581-8440
Naveen KumarLaboratory of Transcription, Centre for DNA Fingerprinting and Diagnostics, Hyderabad, India.ORCID http://orcid.org/0000-0001-8126-3133
Bing WangDepartment of Microbiology and Center for RNA Biology, The Ohio State University, Columbus, OH, USA.ORCID http://orcid.org/0000-0003-1265-9526
Tarek HilalLaboratory of Structural Biochemistry, Institute of Chemistry and Biochemistry, Freie Universität Berlin, Berlin, Germany.ORCID http://orcid.org/0000-0002-7833-8058
Nelly SaidLaboratory of Structural Biochemistry, Institute of Chemistry and Biochemistry, Freie Universität Berlin, Berlin, Germany.ORCID http://orcid.org/0000-0001-8352-5555
Bernhard LollLaboratory of Structural Biochemistry, Institute of Chemistry and Biochemistry, Freie Universität Berlin, Berlin, Germany.ORCID http://orcid.org/0000-0001-7928-4488
Irina ArtsimovitchDepartment of Microbiology and Center for RNA Biology, The Ohio State University, Columbus, OH, USA.ORCID http://orcid.org/0000-0002-8604-0980
Ranjan SenLaboratory of Transcription, Centre for DNA Fingerprinting and Diagnostics, Hyderabad, India.
Markus C WahlLaboratory of Structural Biochemistry, Institute of Chemistry and Biochemistry, Freie Universität Berlin, Berlin, Germany. markus.wahl@fu-berlin.de.ORCID http://orcid.org/0000-0002-2811-5307

Funding

Mechnanism of transcript elongation control by RfaHR01GM067153 · NIGMS · OHIO STATE UNIVERSITY · PI IRINA ARTSIMOVITCH · 2003 to 2026
$8.0M
Bundesministerium für Bildung und Forschung (Federal Ministry of Education and Research) ICMR2019-016Deutsche Forschungsgemeinschaft (German Research Foundation) GRK 2473 "Bioactive Peptides", project number 392923329Deutsche Forschungsgemeinschaft (German Research Foundation) INST 130/1064-1 FUGGDeutsche Forschungsgemeinschaft (German Research Foundation) WA 1126/11-1, project number 433623608Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) GM067153Indian Council of Medical Research (ICMR) AMR/INDO/GER/219/2019-ECD-IIGNIGMS NIH HHS R01 GM067153
6 · The paper itself

Abstract

Many bacteriophages modulate host transcription to favor expression of their own genomes. Phage satellite P4 polarity suppression protein, Psu, a building block of the viral capsid, inhibits hexameric transcription termination factor, ρ, by presently unknown mechanisms. Our cryogenic electron microscopy structures of ρ-Psu complexes show that Psu dimers clamp two inactive, open ρ rings and promote their expansion to higher-oligomeric states. ATPase, nucleotide binding and nucleic acid binding studies revealed that Psu hinders ρ ring closure and traps nucleotides in their binding pockets on ρ. Structure-guided mutagenesis in combination with growth, pull-down, and termination assays further delineated the functional ρ-Psu interfaces in vivo. Bioinformatic analyses revealed that Psu is associated with a wide variety of phage defense systems across Enterobacteriaceae, suggesting that Psu may regulate expression of anti-phage genes. Our findings show that modulation of the ρ oligomeric state via diverse strategies is a pervasive gene regulatory principle in bacteria.

Indexed as

Cryoelectron MicroscopyProtein MultimerizationBacteriophagesCapsid ProteinsEnterobacteriaceaeEscherichia coliModels, MolecularProtein BindingViral ProteinsCapsid ProteinsViral Proteins

Identifiers

PMID39788982
PMCPMC11718236

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.