Evidence map›Paper›PMID 39803482›Full record

ArticlebioRxiv : the preprint server for biology2025

A genetic algorithm for self-supervised models of oscillatory neurodynamics.

Hamed Nejat, Jason Sherfey, André M Bastos

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Hamed NejatDepartment of Psychology, Vanderbilt University, Nashville, TN, USA.ORCID 0009-0003-5963-5801
Jason SherfeyDepartment of Psychological and Brain Sciences, Boston University, Boston, MA, USA.ORCID 0000-0001-8467-0025
André M BastosDepartment of Psychology, Vanderbilt University, Nashville, TN, USA.ORCID 0000-0003-1804-4418

Funding

Testing the Mechanisms, Layers, and Frequencies of Prediction Encoding and its ViolationR00MH116100 · NIMH · VANDERBILT UNIVERSITY · PI BASTOS, ANDRE MORAES · 2021 to 2023
$729k
NIMH NIH HHS R00 MH116100
6 · The paper itself

Abstract

Predictive processing theories propose that the brain supervises itself, to build an internal model of its environment. This internal model emerges by minimizing the prediction error, the discrepancy between internally generated predictions and external sensory signals. Empirically, this internal model is implemented with neurobiology and generates neurodynamics, especially oscillatory rhythms. In current approaches, there exists a trade-off between algorithmic and implementational aspects. One group of predictive processing models perform self-supervised computations but miss neurobiologic details and oscillatory neurodynamics. In the other group, biophysical models implement neural network models with maximal brain-like structure and oscillatory dynamics but require manual supervision. Here, we propose an evolutionary algorithm, the genetic stochastic delta rule (GSDR), to conduct simulations with biophysical neural networks. This approach enhances the explanatory power of theories in neurophysiology by exploring parameter spaces in a self-supervised fashion. We first evaluate GSDR in a simplified and minimal optimization problem. Then, we simulate commonly observed neural dynamics such as firing rate and modulation of neuronal oscillations. We show that GSDR is capable of replicating oscillatory dynamics observed through in-vivo electrophysiology, such that they emerge from synaptic plasticity. This methodology broadens the scope for biology-plausible, automated, large-scale and multi-objective simulations within computational neuroscience. With this virtuous cycle between data and models established by GSDR, we suggest that the search for the circuits underlying predictive processing can be grounded to neuronal data, improving the neurobiological basis of theories.

Identifiers

PMID39803482
PMCPMC11722284

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.