Evidence map›Paper›PMID 39804408›Full record

ArticleApplied microbiology and biotechnology2025

Exploring Tetraselmis chui microbiomes-functional metagenomics for novel catalases and superoxide dismutases.

Jascha F H Macdonald, Yuchen Han, Yekaterina Astafyeva, Lutgardis Bergmann, Marno Gurschke, Philipp Dirksen, Patrick Blümke, Yannik K H Schneider, Malik Alawi, Sebastian Lippemeier and 2 more

Abstract read
In one paragraph

Article in Applied microbiology and biotechnology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Jascha F H MacdonaldDepartment of Microbiology and Biotechnology, Institute of Plant Science and Microbiology, University of Hamburg, Ohnhorststr.18, 22609, Hamburg, Germany.ORCID http://orcid.org/0000-0002-9912-9554
Yuchen HanDepartment of Microbiology and Biotechnology, Institute of Plant Science and Microbiology, University of Hamburg, Ohnhorststr.18, 22609, Hamburg, Germany.ORCID http://orcid.org/0000-0003-3834-0310
Yekaterina AstafyevaDepartment of Microbiology and Biotechnology, Institute of Plant Science and Microbiology, University of Hamburg, Ohnhorststr.18, 22609, Hamburg, Germany.ORCID http://orcid.org/0009-0008-1660-9239
Lutgardis BergmannDepartment of Microbiology and Biotechnology, Institute of Plant Science and Microbiology, University of Hamburg, Ohnhorststr.18, 22609, Hamburg, Germany.ORCID http://orcid.org/0000-0002-0239-415X
Marno GurschkeDepartment of Microbiology and Biotechnology, Institute of Plant Science and Microbiology, University of Hamburg, Ohnhorststr.18, 22609, Hamburg, Germany.
Philipp DirksenBioinformatics Core, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.ORCID http://orcid.org/0000-0002-0336-8711
Patrick BlümkeLeibniz Institute of Virology, Hamburg, Germany.ORCID http://orcid.org/0000-0001-7315-6792
Yannik K H SchneiderMarbio, Faculty of Biosciences, Fisheries and Economics, UiT-The Arctic University of Norway, Tromsø, Norway.ORCID http://orcid.org/0000-0001-6506-1187
Malik AlawiBioinformatics Core, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.ORCID http://orcid.org/0000-0002-5993-7709
Sebastian LippemeierBlueBioTech GmbH, Büsum, Germany.
Jeanette H AndersenMarbio, Faculty of Biosciences, Fisheries and Economics, UiT-The Arctic University of Norway, Tromsø, Norway.ORCID http://orcid.org/0000-0002-6059-060X
Ines KrohnDepartment of Microbiology and Biotechnology, Institute of Plant Science and Microbiology, University of Hamburg, Ohnhorststr.18, 22609, Hamburg, Germany. ines.krohn@uni-hamburg.de.ORCID http://orcid.org/0000-0001-8866-348X

Funding

Bundesministerium für Bildung und Forschung AquaHealth FKZ 031B0945CBundesministerium für Bildung und Forschung SuReMetS FKZ 031B0944A
6 · The paper itself

Abstract

The focus on microalgae for applications in several fields, e.g. resources for biofuel, the food industry, cosmetics, nutraceuticals, biotechnology, and healthcare, has gained increasing attention over the last decades. In this study, we investigate the microbiome of the cultured microalga Tetraselmis chui (T. chui) to highlight their potential for health benefits. In this context, biomolecules like antioxidants play a crucial role in the well-being of living organisms as they metabolise harmful reactive oxygen species (ROS) to reduce oxidative stress. Impaired processing of ROS leads to damaged cells and increases the risk of cancer, inflammatory diseases, and diabetes, among others. Here, we identify, characterise, and test bacterial antioxidants derived from the T. chui microbiome metagenome dataset. We identified 258 genes coding for proteins with potential antioxidant activity. Of those, four novel enzymes are expressed and identified as two superoxide dismutases (SOD), TcJM_SOD2 and TcIK_SOD3, and two catalases (CAT), TcJM_CAT2 and TcIK_CAT3. Extensive analyses characterised all implemented enzymes as active even in concentrations down to 25 ng*ml

Indexed as

CatalaseChlorophytaMetagenomicsMicroalgaeMicrobiotaSuperoxide DismutaseAntioxidantsBacteriaMetagenomeAntioxidantsCatalaseSuperoxide DismutaseAntioxidantsCatalaseHealthcareMetagenomeMicroalgae microbiomeSuperoxide dismutaseTetraselmis chui

Identifiers

PMID39804408
PMCPMC11729112

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.