Evidence map›Paper›PMID 39807536›Full record

ArticleJournal of chemical theory and computation2025

Validation of a Coarse-Grained Martini 3 Model for Molecular Oxygen.

Samaneh Davoudi, Petteri A Vainikka, Siewert J Marrink, An Ghysels

Abstract readValidation Study
PubMed Full text at PMC Publisher
In one paragraph

Article in Journal of chemical theory and computation, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Martini 3 Metabolome.Journal of chemical theory and computation · 2026
    Article
  2. Article
  3. Myelin sheaths can act as compact temporary oxygen storage units as modeled by an electrical RC circuit model.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Samaneh DavoudiIBiTech - BioMMedA Group, Ghent University, Corneel Heymanslaan 10, Entrance 98, 9000 Gent, Belgium.ORCID 0000-0002-2473-9999
Petteri A VainikkaCentre for Analysis and Synthesis, Lund University, Naturvetarvägen 22/Sölvegatan 39 A, 223 62 Lund, Sweden.ORCID 0000-0002-3570-0977
Siewert J MarrinkMolecular Dynamics Group, Groningen University, Nijenborgh 7, 9747 AG Groningen, The Netherlands.ORCID 0000-0001-8423-5277
An GhyselsIBiTech - BioMMedA Group, Ghent University, Corneel Heymanslaan 10, Entrance 98, 9000 Gent, Belgium.ORCID 0000-0003-0015-2605

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Molecular oxygen (O

Indexed as

Molecular Dynamics SimulationOxygenDiffusionHydrophobic and Hydrophilic InteractionsMuramidasePhospholipidsWaterMuramidaseOxygenPhospholipidsWater

Identifiers

PMID39807536
PMCPMC11736683

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.