Evidence map›Paper›PMID 39808665›Full record

ArticlePLoS computational biology2025

Optimal control of agent-based models via surrogate modeling.

Luis L Fonseca, Lucas Böttcher, Borna Mehrad, Reinhard C Laubenbacher

Abstract read
In one paragraph

Article in PLoS computational biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Format-Preserving Reduction of Canonical Nonlinear Models.Bulletin of mathematical biology · 2026
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Personalizing computational models to construct medical digital twins.Journal of the Royal Society, Interface · 2025
    Article
  10. Article
  11. Control of medical digital twins with artificial neural networks.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2025
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Luis L FonsecaLaboratory for Systems Medicine, Department of Medicine, University of Florida, Gainesville, Florida, United States of America.ORCID 0000-0002-7902-742X
Lucas BöttcherLaboratory for Systems Medicine, Department of Medicine, University of Florida, Gainesville, Florida, United States of America.ORCID 0000-0003-1700-1897
Borna MehradLaboratory for Systems Medicine, Department of Medicine, University of Florida, Gainesville, Florida, United States of America.ORCID 0000-0001-5198-065X
Reinhard C LaubenbacherLaboratory for Systems Medicine, Department of Medicine, University of Florida, Gainesville, Florida, United States of America.

Funding

Multiscale modeling of the role of heme during invasive pulmonary aspergillosisR01AI135128 · NIAID · UNIVERSITY OF FLORIDA · PI REINHARD LAUBENBACHER, Borna Mehrad · 2018 to 2026
$4.9M
Mechanistic modeling of the innate immune responses of the human lung to understand the inter-individual heterogeneity of COVID-19 pneumoniaR01HL169974 · NHLBI · UNIVERSITY OF FLORIDA · PI REINHARD LAUBENBACHER, Borna Mehrad · 2023 to 2026
$2.9M
Control of heterogeneous microbial communities using model-based multi-objective optimizationR01GM127909 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI DONGARI-BAGTZOGLOU, ANNA I, LAUBENBACHER, REINHARD · 2018 to 2021
$1.8M
NHLBI NIH HHS R01 HL169974NIAID NIH HHS R01 AI135128NIGMS NIH HHS R01 GM127909
6 · The paper itself

Abstract

This paper describes and validates an algorithm to solve optimal control problems for agent-based models (ABMs). For a given ABM and a given optimal control problem, the algorithm derives a surrogate model, typically lower-dimensional, in the form of a system of ordinary differential equations (ODEs), solves the control problem for the surrogate model, and then transfers the solution back to the original ABM. It applies to quite general ABMs and offers several options for the ODE structure, depending on what information about the ABM is to be used. There is a broad range of applications for such an algorithm, since ABMs are used widely in the life sciences, such as ecology, epidemiology, and biomedicine and healthcare, areas where optimal control is an important purpose for modeling, such as for medical digital twin technology.

Indexed as

AlgorithmsModels, BiologicalComputational BiologyComputer SimulationHumans

Identifiers

PMID39808665
PMCPMC11790234

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.