Evidence map›Paper›PMID 39815096›Full record

ReviewNature2025

The human and non-human primate developmental GTEx projects.

Tim H H Coorens, Amy Guillaumet-Adkins, Rothem Kovner, Rebecca L Linn, Victoria H J Roberts, Amrita Sule, Patrick M Van Hoose, dGTEx Consortium

Abstract readReview
In one paragraph

Review in Nature, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Review
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Killiverse: an interactive multi-omics web resource for killifish.bioRxiv : the preprint server for biology · 2026
    Article
  14. Article
  15. Article
  16. Machine Learning in Nonhuman Primate Models of Infectious Diseases: Current Applications and Future Perspectives.Journal of the American Association for Laboratory Animal Science : JAALAS · 2026
    Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Tim H H CoorensBroad Institute of MIT and Harvard, Cambridge, MA, USA. tcoorens@broadinstitute.org.ORCID 0000-0002-5826-3554
Amy Guillaumet-AdkinsBroad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID 0000-0002-6772-9950
Rothem KovnerYale University, New Haven, CT, USA.
Rebecca L LinnChildren's Hospital of Philadelphia, Philadelphia, PA, USA.
Victoria H J RobertsDivision of Reproductive and Developmental Sciences, Oregon National Primate Research Center, Oregon Health and Sciences University, Portland, OR, USA.
Amrita SuleBroad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID 0000-0001-6782-1899
Patrick M Van HooseNational Disease Research Interchange, Philadelphia, PA, USA.ORCID 0009-0002-6847-9997
dGTEx Consortium

Funding

Multispecies NHP dGTEx Research CenterU24HG012483 · NHGRI · OREGON HEALTH & SCIENCE UNIVERSITY · PI KRISTIN ARDLIE, DONALD F. CONRAD · 2022 to 2026
$17.0M
Developmental GTEx Laboratory, Data Analysis and Coordination CenterU24HG012090 · NHGRI · BROAD INSTITUTE, INC. · PI ARDLIE, KRISTIN, GETZ, GAD A · 2021 to 2025
$12.6M
Pediatric Biospecimen Procurement Center (BPC) Supporting the Developmental Gene Expression (dGTEx) ProjectU24HD106537 · NICHD · NATIONAL DISEASE RESEARCH INTERCHANGE · PI THOMAS G BLANCHARD, Thomas J Bell · 2021 to 2026
$11.9M
Laboratory, Data Analysis, and Coordinating Center (LDACC) for the Developmental Human Genotype-Tissue Expression ProjectU24HG012108 · NHGRI · YALE UNIVERSITY · PI GERSTEIN, MARK BENDER, HUTTNER, ANITA JULIANE · 2021 to 2025
$8.7M
Coordinating center for collaborative marmoset researchU24MH123696 · NIMH · OREGON HEALTH & SCIENCE UNIVERSITY · PI DONALD F. CONRAD · 2020 to 2026
$4.6M
NHGRI NIH HHS U24 HG012090NHGRI NIH HHS U24 HG012108NHGRI NIH HHS U24 HG012483NICHD NIH HHS U24 HD106537NIMH NIH HHS U24 MH123696
6 · The paper itself

Abstract

Many human diseases are the result of early developmental defects. As most paediatric diseases and disorders are rare, children are critically underrepresented in research. Functional genomics studies primarily rely on adult tissues and lack critical cell states in specific developmental windows. In parallel, little is known about the conservation of developmental programmes across non-human primate (NHP) species, with implications for human evolution. Here we introduce the developmental Genotype-Tissue Expression (dGTEx) projects, which span humans and NHPs and aim to integrate gene expression, regulation and genetics data across development and species. The dGTEx cohort will consist of 74 tissue sites across 120 human donors from birth to adulthood, and developmentally matched NHP age groups, with additional prenatal and adult animals, with 126 rhesus macaques (Macaca mulatta) and 72 common marmosets (Callithrix jacchus). The data will comprise whole-genome sequencing, extensive bulk, single-cell and spatial gene expression profiles, and chromatin accessibility data across tissues and development. Through community engagement and donor diversity, the human dGTEx study seeks to address disparities in genomic research. Thus, dGTEx will provide a reference human and NHP dataset and tissue bank, enabling research into developmental changes in expression and gene regulation, childhood disorders and the effect of genetic variation on development.

Indexed as

CallithrixGene Expression Regulation, DevelopmentalGenomicsMacaca mulattaAdultAnimalsChildChild, PreschoolChromatinCohort StudiesFemaleGene Expression ProfilingGenotypeHumansInfantInfant, NewbornChromatin

Identifiers

PMID39815096
PMCPMC12013525

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.