Evidence map›Paper›PMID 39818213›Full record

ArticleStructure (London, England : 1993)2025

Structure of E6AP in complex with HPV16-E6 and p53 reveals a novel ordered domain important for E3 ligase activation.

Sebastian Kenny, Shalini Iyer, Clinton A Gabel, Natalia Tegenfeldt, Andrew G DeMarco, Mark C Hall, Leifu Chang, V Jo Davisson, Scott Vande Pol, Chittaranjan Das

Abstract read
In one paragraph

Article in Structure (London, England : 1993), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Sebastian KennyDepartment of Chemistry, Purdue University, West Lafayette, IN 47907, USA.
Shalini IyerDepartment of Chemistry, Purdue University, West Lafayette, IN 47907, USA.
Clinton A GabelDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA.
Natalia TegenfeldtDepartment of Pathology, University of Virginia, Charlottesville, VA 22908, USA.
Andrew G DeMarcoDepartment of Biochemistry, Purdue University, West Lafayette, IN 47907, USA.
Mark C HallDepartment of Biochemistry, Purdue University, West Lafayette, IN 47907, USA.
Leifu ChangDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA.
V Jo DavissonDepartment of Medicinal Chemistry and Molecular Pharmacology, Purdue University, West Lafayette, IN 47907, USA.
Scott Vande PolDepartment of Pathology, University of Virginia, Charlottesville, VA 22908, USA. Electronic address: sbv5w@virginia.edu.
Chittaranjan DasDepartment of Chemistry, Purdue University, West Lafayette, IN 47907, USA. Electronic address: cdas@purdue.edu.

Funding

The Stanford-SLAC CryoEM Center supplementU24GM129541 · NIGMS · STANFORD UNIVERSITY · PI CHIU, WAH, HEDMAN, BRITT · 2018 to 2023
$54.8M
Transgenic Mouse Core Facility Shared Resource (TMCF-SR)P30CA023168 · NCI · PURDUE UNIVERSITY WEST LAFAYETTE · PI ANDREW D MESECAR · 1985 to 2026
$43.4M
Plasticity of Auditory Cortical Circuits in SchizophreniaR01MH071533 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SWEET, ROBERT A · 2004 to 2018
$6.9M
Training for Transformative Discovery in PsychiatryT32MH016804 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SWEET, ROBERT A · 1985 to 2025
$6.2M
Mechanism of atypical ubiquitination and deubiquitination by bacterial effectorsR01GM126296 · NIGMS · PURDUE UNIVERSITY · PI Chittaranjan Das · 2018 to 2026
$3.6M
Papillomavirus E6 cellular targetsR01AI158426 · NIAID · UNIVERSITY OF VIRGINIA · PI VANDE POL, SCOTT BRIAN · 2021 to 2024
$2.1M
Purdue University Molecular Biophysics Training ProgramT32GM132024 · NIGMS · PURDUE UNIVERSITY · PI Angeline Marie Lyon, John Tesmer · 2019 to 2026
$2.0M
NCI NIH HHS P30 CA023168NIAID NIH HHS R01 AI158426NIGMS NIH HHS R01 GM126296NIGMS NIH HHS T32 GM132024NIGMS NIH HHS U24 GM129541NIMH NIH HHS R01 MH071533NIMH NIH HHS T32 MH016804
6 · The paper itself

Abstract

High-risk human papillomavirus E6 oncoprotein is a model system for the recognition and degradation of cellular p53 tumor suppressor protein. There remains a gap in the understanding of the ubiquitin transfer reaction, including placement of the E6AP catalytic HECT domain of the ligase concerning the p53 substrate and how E6 itself is protected from ubiquitination. We determined the cryoelectron microscopy (cryo-EM) structure of the E6AP/E6/p53 complex, related the structure to in vivo modeling of the tri-molecular complex, and identified structural interactions associated with activation of the ubiquitin ligase function. The structure reveals that the N-terminal ordered domain (NOD) in E6AP has a terminal alpha helix that mediates the interaction of the NOD with the HECT domain of E6AP and protects the HPV-E6 protein from ubiquitination. In addition, this NOD helix is required for E6AP ligase function by contributing to the affinity of the E6-E6AP association, modulating E6 substrate recognition, while displacing UbcH7.

Indexed as

Oncogene Proteins, ViralRepressor ProteinsTumor Suppressor Protein p53Ubiquitin-Protein LigasesCryoelectron MicroscopyHumansModels, MolecularProtein BindingProtein DomainsUbiquitinationE6 protein, Human papillomavirus type 16Oncogene Proteins, ViralRepressor ProteinsTP53 protein, humanTumor Suppressor Protein p53UBE3A protein, humanUbiquitin-Protein Ligasescryo-EME3 ligaseE6APHPVligase activationtargeted degradationubiquitinviral factoryeast hybrid

Identifiers

PMID39818213
PMCPMC12207913

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.