Evidence map›Paper›PMID 39820032›Full record

ArticlePloS one2025

Development of a broad-spectrum epitope-based vaccine against Streptococcus pneumoniae.

Md Nahian, Muhammad Shahab, Md Rasel Khan, Shopnil Akash, Tanjina Akhtar Banu, Murshed Hasan Sarkar, Barna Goswami, Sanjana Fatema Chowdhury, Mohammad Ariful Islam, Ahmed Abu Rus'd and 5 more

Abstract read
In one paragraph

Article in PloS one, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Towards precision epitopes based vaccine againstBiochemistry and biophysics reports · 2025
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Md NahianDepartment of Microbiology, Jagannath University, Dhaka, Bangladesh.ORCID 0000-0001-6835-986X
Muhammad ShahabState Key Laboratories of Chemical Resources Engineering, Beijing University of Chemical Technology, Beijing, China.
Md Rasel KhanDepartment of Microbiology, Jagannath University, Dhaka, Bangladesh.
Shopnil AkashComputational Biology Research Laboratory, Department of Pharmacy, Daffodil International University, Dhaka, Bangladesh.ORCID 0000-0003-1751-705X
Tanjina Akhtar BanuBangladesh Council of Scientific and Industrial Research (BCSIR), Dhaka, Bangladesh.
Murshed Hasan SarkarBangladesh Council of Scientific and Industrial Research (BCSIR), Dhaka, Bangladesh.
Barna GoswamiBangladesh Council of Scientific and Industrial Research (BCSIR), Dhaka, Bangladesh.
Sanjana Fatema ChowdhuryBangladesh Council of Scientific and Industrial Research (BCSIR), Dhaka, Bangladesh.
Mohammad Ariful IslamDepartment of Microbiology, Jagannath University, Dhaka, Bangladesh.
Ahmed Abu Rus'dDepartment of Microbiology, Jagannath University, Dhaka, Bangladesh.
Shamima BegumDepartment of Microbiology, Jagannath University, Dhaka, Bangladesh.
Ahashan HabibBangladesh Council of Scientific and Industrial Research (BCSIR), Dhaka, Bangladesh.
Aftab Ali ShaikhBangladesh Council of Scientific and Industrial Research (BCSIR), Dhaka, Bangladesh.
Jonas Ivan Nobre OliveiraDepartamento de Biofísica e Farmacologia, Universidade Federal do Rio Grande do Norte, Natal, RN, Brazil.
Shahina AkterBangladesh Council of Scientific and Industrial Research (BCSIR), Dhaka, Bangladesh.ORCID 0000-0001-7776-6686

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Streptococcus pneumoniae (SPN) is a significant pathogen causing pneumonia and meningitis, particularly in vulnerable populations like children and the elderly. Available pneumonia vaccines have limitations since they only cover particular serotypes and have high production costs. The emergence of antibiotic-resistant SPN strains further underscores the need for a new, cost-effective, broad-spectrum vaccine. Two potential vaccine candidates, CbpA and PspA, were identified, and their B-cell, CTL, and HTL epitopes were predicted and connected with suitable linkers, adjivant and PADRE sequence. The vaccine construct was found to be antigenic, non-toxic, non-allergenic, and soluble. The three-dimensional structure of the vaccine candidate was built and validated. Docking analysis of the vaccine candidate by ClusPro demonstrated robust and stable binding interactions between the MEV and toll-like receptor 4 in both humans and animals. The iMOD server and Amber v.22 tool has verified the stability of the docking complexes. GenScript server confirmed the high efficiency of cloning for the construct and in-silico cloning into the pET28a (+) vector using SnapGene, demonstrating successful translation of the epitope region. Immunological responses were shown to be enhanced by the C-IMMSIM server. This study introduced a strong peptide vaccine candidate that has the potential to contribute to the development of a rapid and cost-effective solution for combating SPN. However, experimental verification is necessary to evaluate the vaccine's effectiveness.

Indexed as

EpitopesPneumococcal InfectionsPneumococcal VaccinesStreptococcus pneumoniaeAnimalsAntigens, BacterialBacterial ProteinsComputational BiologyHumansMiceMolecular Docking SimulationToll-Like Receptor 4Vaccine DevelopmentAntigens, BacterialBacterial ProteinsCbpA protein, bacteriaEpitopespneumococcal surface protein APneumococcal VaccinesToll-Like Receptor 4

Identifiers

PMID39820032
PMCPMC11737669

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.