Evidence map›Paper›PMID 39824155›Full record

ArticleCell chemical biology2025

Commensal-derived tryptophan metabolites fortify the skin barrier: Insights from a 50-species gnotobiotic model of human skin microbiome.

Aayushi Uberoi, Sofía M Murga-Garrido, Preeti Bhanap, Amy E Campbell, Simon A B Knight, Monica Wei, Anya Chan, Taylor Senay, Saba Tegegne, Ellen K White and 4 more

Abstract read
In one paragraph

Article in Cell chemical biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Skin-lung axis in the atopic march: The immune link from skin to lungs.Chinese medical journal pulmonary and critical care medicine · 2025
    Review
  12. Review
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. CommensalFrontiers in immunology · 2025
    Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Aayushi UberoiDepartment of Dermatology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA; Department of Pathology and Immunology, Division of Laboratory and Genomic Medicine, Washington University School of Medicine in St. Louis, St. Louis, MO, USA. Electronic address: uberoi@wustl.edu.
Sofía M Murga-GarridoDepartment of Dermatology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Preeti BhanapDepartment of Dermatology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Amy E CampbellDepartment of Dermatology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Simon A B KnightDepartment of Dermatology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Monica WeiDepartment of Dermatology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Anya ChanDepartment of Dermatology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Taylor SenayDepartment of Dermatology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Saba TegegneDepartment of Dermatology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Ellen K WhiteDepartment of Dermatology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Carrie Hayes SutterDepartment of Biological Sciences, University of Memphis, Memphis, TN, USA.
Clementina MesarosCenter of Excellence in Environmental Toxicology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Thomas R SutterDepartment of Biological Sciences, University of Memphis, Memphis, TN, USA.
Elizabeth A GriceDepartment of Dermatology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA. Electronic address: egrice@pennmedicine.upenn.edu.

Funding

Translational Research Support CoreP30ES013508 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI A. Clementina Mesaros · 2006 to 2026
$35.3M
Penn Dermatology Research Training ProgramT32AR007465 · NIAMS · UNIVERSITY OF PENNSYLVANIA · PI Elizabeth Anne Grice, David Joel Margolis · 1986 to 2026
$9.0M
Study Design and Data AnalysisP30AR069589 · NIAMS · UNIVERSITY OF PENNSYLVANIA · PI Elizabeth Anne Grice · 2016 to 2026
$8.6M
Microbial regulation of the keratinocyte AHRR01AR079856 · NIAMS · UNIVERSITY OF PENNSYLVANIA · PI Elizabeth Anne Grice, THOMAS R SUTTER · 2022 to 2026
$2.7M
Training in Microbial Pathogenesis and GenomicsT32AI141393 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI GOULIAN, MARK D, ZHU, JUN · 2019 to 2023
$1.3M
Decoding microbial-Aryl Hydrocarbon Receptor interactions at the skin barrier interfaceR00AR081404 · NIAMS · WASHINGTON UNIVERSITY · PI AAYUSHI UBEROI · 2024 to 2026
$674k
Decoding microbial-Aryl Hydrocarbon Receptor interactions at the skin barrier interfaceK99AR081404 · NIAMS · UNIVERSITY OF PENNSYLVANIA · PI UBEROI, AAYUSHI · 2022 to 2023
$181k
Skin microbiome interactions with neonatal aryl hydrocarbon receptor signaling: roles in cutaneous barrier function, inflammation, and toleranceR56ES030218 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI GRICE, ELIZABETH ANNE, SUTTER, THOMAS R · 2019 to 2019
$161k
NIAID NIH HHS T32 AI141393NIAMS NIH HHS K99 AR081404NIAMS NIH HHS P30 AR069589NIAMS NIH HHS R00 AR081404NIAMS NIH HHS R01 AR079856NIAMS NIH HHS T32 AR007465NIEHS NIH HHS P30 ES013508NIEHS NIH HHS R56 ES030218
6 · The paper itself

Abstract

The epidermal barrier defends the body against dehydration and harmful substances. The commensal microbiota is essential for proper differentiation and repair of the epidermal barrier, an effect mediated by the aryl hydrocarbon receptor (AHR). However, the microbial mechanisms of AHR activation in skin are less understood. Tryptophan metabolites are AHR ligands that can be products of microbial metabolism. To identify microbially regulated tryptophan metabolites in vivo, we established a gnotobiotic model colonized with fifty human skin commensals and performed targeted mass spectrometry on murine skin. Indole-related metabolites were enriched in colonized skin compared to germ-free skin. In reconstructed human epidermis and in murine models of atopic-like barrier damage, these metabolites improved barrier repair and function individually and as a cocktail. These results provide a framework for the identification of microbial metabolites that mediate specific host functions, which can guide the development of microbe-based therapies for skin disorders.

Indexed as

MicrobiotaSkinTryptophanAnimalsFemaleGerm-Free LifeHumansMiceReceptors, Aryl HydrocarbonSkin MicrobiomeReceptors, Aryl HydrocarbonTryptophanaryl hydrocarbon receptorkeratinocytesskin barrierskin microbiotatryptophan

Identifiers

PMID39824155
PMCPMC11753614

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.