Evidence map›Paper›PMID 39830999›Full record

ArticleNpj biosensing2025

Direct observation of small molecule activator binding to single PR65 protein.

Annie Yang-Schulz, Maria Zacharopoulou, Sema Zeynep Yilmaz, Anupam Banerjee, Satyaki Saha, Daniel Nietlispach, Michael Ohlmeyer, Mert Gur, Laura S Itzhaki, Ivet Bahar and 1 more

Abstract read
In one paragraph

Article in Npj biosensing, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Annie Yang-Schulz *Department of Electrical Engineering, University of Victoria, Victoria, BC V8W 3P6 Canada.
Maria Zacharopoulou *Department of Pharmacology, University of Cambridge, Tennis Court Road, Cambridge, CB2 1PD UK.
Sema Zeynep YilmazDepartment of Mechanical Engineering, Istanbul Technical University, Istanbul, 34437 Turkey.
Anupam BanerjeeLaufer Center for Physical and Quantitative Biology, Stony Brook University, Stony Brook, NY 11794 USA.
Satyaki SahaLaufer Center for Physical and Quantitative Biology, Stony Brook University, Stony Brook, NY 11794 USA.
Daniel NietlispachDepartment of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QW UK.
Michael OhlmeyerAtux Iskay LLC, Plainsboro, New Jersey, NJ 08536 USA.
Mert GurDepartment of Computational and Systems Biology, School of Medicine, University of Pittsburgh, Pittsburgh, PA 15213 USA.
Laura S ItzhakiDepartment of Pharmacology, University of Cambridge, Tennis Court Road, Cambridge, CB2 1PD UK.
Ivet BaharLaufer Center for Physical and Quantitative Biology, Stony Brook University, Stony Brook, NY 11794 USA.
Reuven GordonDepartment of Electrical Engineering, University of Victoria, Victoria, BC V8W 3P6 Canada.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The reactivation of heterotrimeric protein phosphatase 2A (PP2A) through small molecule activators is of interest to therapeutic intervention due to its dysregulation, which is linked to chronic conditions. This study focuses on the PP2A scaffold subunit PR65 and a small molecule activator, ATUX-8385, designed to bind directly to this subunit. Using a label-free single-molecule approach with nanoaperture optical tweezers (NOT), we quantify its binding, obtaining a dissociation constant of 13.6 ± 2.5 μM, consistent with ensemble fluorescence anisotropy results but challenging to achieve with other methods due to low affinity. Single-molecule NOT measurements reveal that binding increases optical scattering, indicating PR65 elongation. This interpretation is supported by all-atom molecular dynamics simulations showing PR65 adopts more extended conformations upon binding. This work highlights NOT's utility in quantifying binding kinetics and structural impact, offering insights valuable for drug discovery.

Indexed as

CancerPharmacologyTechniques and instrumentation

Identifiers

PMID39830999
PMCPMC11738983

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.