Evidence map›Paper›PMID 39836649›Full record

ArticlePLoS genetics2025

SEM-2/SoxC regulates multiple aspects of C. elegans postembryonic mesoderm development.

Marissa Baccas, Vanathi Ganesan, Amy Leung, Lucas R Pineiro, Alexandra N McKillop, Jun Liu

Abstract read
In one paragraph

Article in PLoS genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Marissa BaccasDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York, United States of America.
Vanathi GanesanDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York, United States of America.ORCID https://orcid.org/0000-0003-2779-7315
Amy LeungDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York, United States of America.ORCID https://orcid.org/0000-0002-5175-430X
Lucas R PineiroDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York, United States of America.
Alexandra N McKillopDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York, United States of America.
Jun LiuDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York, United States of America.ORCID https://orcid.org/0000-0001-7815-4075

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
Molecular Mechanisms Regulating and Interpreting BMP SignalingR35GM130351 · NIGMS · CORNELL UNIVERSITY · PI Jun Liu · 2019 to 2026
$4.3M
Cornell Initiative for Maximizing Student DevelopmentR25GM125597 · NIGMS · CORNELL UNIVERSITY · PI AUGUST, AVERY · 2018 to 2022
$2.2M
NIGMS NIH HHS R25 GM125597NIGMS NIH HHS R35 GM130351NIH HHS P40 OD010440
6 · The paper itself

Abstract

Development of multicellular organisms requires well-orchestrated interplay between cell-intrinsic transcription factors and cell-cell signaling. One set of highly conserved transcription factors that plays diverse roles in development is the SoxC group. C. elegans contains a sole SoxC protein, SEM-2. SEM-2 is essential for embryonic development, and for specifying the sex myoblast (SM) fate in the postembryonic mesoderm, the M lineage. We have identified a novel partial loss-of-function sem-2 allele that has a proline to serine change in the C-terminal tail of the highly conserved DNA-binding domain. Detailed analyses of mutant animals harboring this point mutation uncovered new functions of SEM-2 in the M lineage. First, SEM-2 functions antagonistically with LET-381, the sole C. elegans FoxF/C forkhead transcription factor, to regulate dorsoventral patterning of the M lineage. Second, in addition to specifying the SM fate, SEM-2 is essential for the proliferation and diversification of the SM lineage. Finally, SEM-2 appears to directly regulate the expression of hlh-8, which encodes a basic helix-loop-helix Twist transcription factor and plays critical roles in proper patterning of the M lineage. Our data, along with previous studies, suggest an evolutionarily conserved relationship between SoxC and Twist proteins. Furthermore, our work identified new interactions in the gene regulatory network (GRN) underlying C. elegans postembryonic development and adds to the general understanding of the structure-function relationship of SoxC proteins.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsMesodermSOXC Transcription FactorsAnimalsBody PatterningCell LineageEmbryonic DevelopmentForkhead Transcription FactorsGene Expression Regulation, DevelopmentalCaenorhabditis elegans ProteinsForkhead Transcription FactorsSOXC Transcription Factors

Identifiers

PMID39836649
PMCPMC11785321

What Socratic holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.