Evidence map›Paper›PMID 39844048›Full record

ArticleBMC plant biology2025

Integrated metabolomics and transcriptomics reveal the role of calcium sugar alcohol in the regulation of phenolic acid biosynthesis in Torreya grandis nuts.

Qiandan Xie, Zhengchu Jiang, Chenliang Yu, Qi Wang, Wensheng Dai, Jiasheng Wu, Weiwu Yu

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in BMC plant biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Qiandan Xie *State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, People's Republic of China.
Zhengchu Jiang *State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, People's Republic of China.
Chenliang YuState Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, People's Republic of China. 21007030@zju.edu.cn.
Qi WangState Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, People's Republic of China.
Wensheng DaiState Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, People's Republic of China.
Jiasheng WuState Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, People's Republic of China. wujs@zafu.edu.cn.
Weiwu YuState Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, People's Republic of China. yww888@zafu.edu.cn.

Funding

the Breeding of New Varieties of Torreya grandis Program 2021C02066-11the cooperative forestry science and technology project of Zhejiang Provincial Academy 2022SY14the National Natural Science Foundation of China 32171830the "Pioneer" and "Leading Goose" R&D Program of Zhejian 2022C02061
6 · The paper itself

Abstract

backgroundTorreya grandis, a prominent tree species of the autochthonous subtropical region of China, possesses a drupe-like fruit containing a nut that is rich in nutrients and bioactive compounds. However, the effect of calcium (Ca

resultsTranscriptome sequencing detected 47,064 transcripts, and several phenolic acid biosynthesis pathway-related genes were identified. Correlation analysis showed that the four transcription factors, TgWRKY1, TgAP2-1, TgAP2-3, and TgAP2-4, were positively associated with the accumulation of phenolic acids. Furthermore, the binding of TgAP2-1 to the TgHCT promoter was confirmed using yeast one hybrid and dual-luciferase assays. Furthermore, the expression of TgHCT in Nicotiana enhanced the total flavonoid content.

conclusionsOur results indicated that a new regulatory module, Ca

Indexed as

CalciumHydroxybenzoatesNutsTranscriptomeGene Expression ProfilingGene Expression Regulation, PlantMetabolomicsPlant ProteinsTranscription FactorsCalciumHydroxybenzoatesphenolic acidPlant ProteinsTranscription FactorsCalcium sugar alcoholPhenolic acidsTranscription regulationTranscriptome sequencingUntargeted metabolome

Identifiers

PMID39844048
PMCPMC11756137

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.