Evidence map›Paper›PMID 39846980›Full record

ArticlePlant biotechnology journal2025

Jan and mini-Jan, a model system for potato functional genomics.

Haoyang Xin, Luke W Strickland, John P Hamilton, Jacob K Trusky, Chao Fang, Nathaniel M Butler, David S Douches, C Robin Buell, Jiming Jiang

Abstract read
In one paragraph

Article in Plant biotechnology journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. CRISPR-Cas Gene Editing Technology in Potato.International journal of molecular sciences · 2025
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Haoyang Xin *Department of Plant Biology, Michigan State University, East Lansing, MI, USA.ORCID https://orcid.org/0000-0003-4860-456X
Luke W Strickland *Department of Plant Biology, Michigan State University, East Lansing, MI, USA.ORCID https://orcid.org/0009-0008-2363-2795
John P HamiltonCenter for Applied Genetic Technologies, University of Georgia, Athens, GA, USA.
Jacob K TruskyDepartment of Plant Biology, Michigan State University, East Lansing, MI, USA.
Chao FangDepartment of Plant Biology, Michigan State University, East Lansing, MI, USA.
Nathaniel M ButlerDepartment of Horticulture, University of Wisconsin-Madison, Madison, WI, USA.
David S DouchesDepartment of Plant, Soil, and Microbial Sciences, Michigan State University, East Lansing, MI, USA.
C Robin BuellCenter for Applied Genetic Technologies, University of Georgia, Athens, GA, USA.
Jiming JiangDepartment of Plant Biology, Michigan State University, East Lansing, MI, USA.ORCID https://orcid.org/0000-0002-6435-6140

Funding

Plant Biotechnology for Health and SustainabilityT32GM110523 · NIGMS · MICHIGAN STATE UNIVERSITY · PI LAST, ROBERT LOUIS · 2014 to 2023
$2.2M
Plant Biotechnology for Health and SustainabilityT32GM152798 · NIGMS · MICHIGAN STATE UNIVERSITY · PI Daniel C Ducat, Robert Louis Last · 2024 to 2026
$976k
NIGMS NIH HHS T32 GM110523NIGMS NIH HHS T32GM110523NIGMS NIH HHS T32 GM152798NIGMS NIH HHS T32GM152798United States - Israel Binational Agricultural Research and Development Fund IS-5317-20CUnited States - Israel Binational Agricultural Research and Development Fund IS-5684-24C
6 · The paper itself

Abstract

Potato (Solanum tuberosum) is the third-most important food crop in the world. Although the potato genome has been fully sequenced, functional genomics research of potato lags behind that of other major food crops, largely due to the lack of a model experimental potato line. Here, we present a diploid potato line, 'Jan,' which possesses all essential characteristics for facile functional genomics studies. Jan exhibits a high level of homozygosity after seven generations of self-pollination. Jan is vigorous, highly fertile and produces tubers with outstanding traits. Additionally, it demonstrates high regeneration rates and excellent transformation efficiencies. We generated a chromosome-scale genome assembly for Jan, annotated its genes and identified syntelogs relative to the potato reference genome assembly DMv6.1 to facilitate functional genomics. To miniaturize plant architecture, we developed two 'mini-Jan' lines with compact and dwarf plant stature through CRISPR/Cas9-mediated mutagenesis targeting the Dwarf and Erecta genes involved in growth. One mini-Jan mutant, mini-Jan

Indexed as

Genome, PlantGenomicsSolanum tuberosumCRISPR-Cas SystemsDiploidyfunctional genomicsgene editinggenome sequencingpotato

Identifiers

PMID39846980
PMCPMC11933877

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.