Evidence map›Paper›PMID 39847492›Full record

ArticleAnnals of botany2025

Genome-wide analysis of the CsAP2/ERF gene family of sweet orange (Citrus sinensis) and joint analysis of transcriptional metabolism under salt stress.

Mengjie Zhang, Yinqiang Zi, Xiujia Yang, Xiuyao Yang, Ling Zhu, Hanbing Cai, Tuo Yin, Xiaozhen Liu, Hanyao Zhang

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Article in Annals of botany, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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  5. Isolation and Expression Pattern Analysis ofPlants (Basel, Switzerland) · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Mengjie ZhangKey Laboratory for Forest Resources Conservation and Utilization in the Southwest Mountains of China, Ministry of Education, Southwest Forestry University, Kunming 650224, China.
Yinqiang ZiKey Laboratory for Forest Resources Conservation and Utilization in the Southwest Mountains of China, Ministry of Education, Southwest Forestry University, Kunming 650224, China.
Xiujia YangKey Laboratory for Forest Resources Conservation and Utilization in the Southwest Mountains of China, Ministry of Education, Southwest Forestry University, Kunming 650224, China.
Xiuyao YangKey Laboratory of Biodiversity Conservation in Southwest China, National Forest and Grassland Administration, Southwest Forestry University, Kunming, Yunnan Province 650224, China.
Ling ZhuKey Laboratory for Forest Resources Conservation and Utilization in the Southwest Mountains of China, Ministry of Education, Southwest Forestry University, Kunming 650224, China.
Hanbing CaiKey Laboratory of Biodiversity Conservation in Southwest China, National Forest and Grassland Administration, Southwest Forestry University, Kunming, Yunnan Province 650224, China.
Tuo YinKey Laboratory of Biodiversity Conservation in Southwest China, National Forest and Grassland Administration, Southwest Forestry University, Kunming, Yunnan Province 650224, China.
Xiaozhen LiuKey Laboratory of Biodiversity Conservation in Southwest China, National Forest and Grassland Administration, Southwest Forestry University, Kunming, Yunnan Province 650224, China.
Hanyao ZhangKey Laboratory for Forest Resources Conservation and Utilization in the Southwest Mountains of China, Ministry of Education, Southwest Forestry University, Kunming 650224, China.

Funding

Rural Revitalization Science and Technology Project-Integrated Demonstration of Key Technologies for Rural Revitalization Industry Project 202304BP090005Science and Technology Project for Universities in Yunnan Province Serving Key Industries QYCT2024015
6 · The paper itself

Abstract

backgroundSweet orange is an important economic crop, and salt stress can inhibit its growth and development.

methodsIn this study, we identified AP2/ERFgenes in sweet orange via bioinformatics and performed a combined transcription-metabolism analysis, which revealed, for the first time, the integrated molecular mechanism of salt stress regulation in sweet orange. KEY

resultsA total of 131 sweet orange AP2/ERF genes were identified and categorized into five groups. By comparing the tertiary protein structures of these genes with those of Arabidopsis, we found that five sweet orange genes (CsERF38, CsERF41, CsERF42, CsERF84 and CsERF110) related to salt stress and ethylene transcription are highly similar in composition and structure to those of Arabidopsis, and we hypothesize that they have similar functions. ABREs and AREs were the predominant cis-acting elements in the sweet orange AP2/ERF gene family, and both were associated with salt stress. The AP2/ERF gene family was verified to be involved in the salt stress response via qRT-PCR. According to the differentially abundant metabolite KEGG network, we chose the differentially abundant metabolites ethylene, gibberellin and jasmonic acid as the primary research objects; the CsAP2/ERF gene family is an ethylene-responsive element binding factor.

conclusionIn this study, the complete framework of the AP2/ERF gene family was constructed for the first time. A model of salt stress regulation in sweet oranges was established.

Indexed as

Citrus sinensisPlant ProteinsSalt StressEthylenesGene Expression Regulation, PlantGenome-Wide Association StudyMultigene FamilyTranscription FactorsethyleneEthylenesPlant ProteinsTranscription FactorsAP2/ERF gene familysalt stresssalt stress modelSweet orangetranscriptome metabolism joint analysis

Identifiers

PMID39847492
PMCPMC12259534

What Socratic holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.