Evidence map›Paper›PMID 39848701›Full record

ArticleThe European respiratory journal2025

The blood transcriptional response in patients developing intensive care unit-acquired pneumonia.

Justin de Brabander, Erik H A Michels, Joe M Butler, Tom D Y Reijnders, Tjitske S R van Engelen, Giuseppe G F Leite, Fleur P Paling, Augustijn M Klarenbeek, Daoud L S Sie, Roxane E Boyer and 8 more

Abstract readMulticenter Study
In one paragraph

Article in The European respiratory journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors.

Justin de BrabanderCenter for Experimental and Molecular Medicine (CEMM), Amsterdam UMC location University of Amsterdam, Amsterdam, The Netherlands j.debrabander@amsterdamumc.nl.ORCID https://orcid.org/0000-0002-3596-5086
Erik H A MichelsCenter for Experimental and Molecular Medicine (CEMM), Amsterdam UMC location University of Amsterdam, Amsterdam, The Netherlands.ORCID https://orcid.org/0000-0001-8145-2444
Joe M ButlerCenter for Experimental and Molecular Medicine (CEMM), Amsterdam UMC location University of Amsterdam, Amsterdam, The Netherlands.ORCID https://orcid.org/0000-0001-6781-6408
Tom D Y ReijndersCenter for Experimental and Molecular Medicine (CEMM), Amsterdam UMC location University of Amsterdam, Amsterdam, The Netherlands.
Tjitske S R van EngelenCenter for Experimental and Molecular Medicine (CEMM), Amsterdam UMC location University of Amsterdam, Amsterdam, The Netherlands.ORCID https://orcid.org/0000-0001-6186-2550
Giuseppe G F LeiteCenter for Experimental and Molecular Medicine (CEMM), Amsterdam UMC location University of Amsterdam, Amsterdam, The Netherlands.ORCID https://orcid.org/0000-0003-1848-4480
Fleur P PalingJulius Center for Health Sciences and Primary Care, UMC Utrecht, Utrecht University, Utrecht, The Netherlands.ORCID https://orcid.org/0000-0002-5713-7652
Augustijn M KlarenbeekCenter for Experimental and Molecular Medicine (CEMM), Amsterdam UMC location University of Amsterdam, Amsterdam, The Netherlands.
Daoud L S SieDepartment of Human Genetics, Amsterdam UMC location Vrije Universiteit, Amsterdam, The Netherlands.
Roxane E BoyerDepartment of Human Genetics, Amsterdam UMC location Vrije Universiteit, Amsterdam, The Netherlands.
Timothy E SweeneyInflammatix Inc., Sunnyvale, CA, USA.
Marc J M BontenJulius Center for Health Sciences and Primary Care, UMC Utrecht, Utrecht University, Utrecht, The Netherlands.
Leen TimbermontLaboratory of Medical Microbiology, Vaccine and Infectious Disease Institute, University of Antwerp, Antwerp, Belgium.ORCID https://orcid.org/0000-0002-9543-9205
Surbhi Malhotra-KumarLaboratory of Medical Microbiology, Vaccine and Infectious Disease Institute, University of Antwerp, Antwerp, Belgium.
Jan A J W KluytmansDepartment of Medical Microbiology, UMC Utrecht, Utrecht University, Utrecht, The Netherlands.
Hessel Peters-SengersCenter for Experimental and Molecular Medicine (CEMM), Amsterdam UMC location University of Amsterdam, Amsterdam, The Netherlands.ORCID https://orcid.org/0000-0003-3145-864X
Tom van der PollCenter for Experimental and Molecular Medicine (CEMM), Amsterdam UMC location University of Amsterdam, Amsterdam, The Netherlands.
ASPIRE-ICU study team

Funding

Inflammation and the Response to InjuryU54GM062119 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI TOMPKINS, RONALD GARY · 2001 to 2010
$78.6M
NIGMS NIH HHS U54 GM062119
6 · The paper itself

Abstract

backgroundImmune response dysregulation has been implicated in the development of intensive care unit (ICU)-acquired pneumonia. We aimed to determine differences in the longitudinal blood transcriptional response between patients who develop ICU-acquired pneumonia (cases) and those who do not (controls).

methodsWe performed a case-cohort study in mechanically ventilated trauma and surgery patients with ICU stays >2 days, enrolled in 30 hospitals across Europe. We collected blood for RNA sequencing at baseline, day 7 and (in cases) the day of pneumonia diagnosis. We performed gene set enrichment analysis and analysed longitudinal gene expression changes using linear mixed models. External validation was performed using an independent trauma cohort.

resultsWe enrolled 113 cases and 115 controls, with similar baseline characteristics. At baseline (median 2 days after ICU admission), cases showed upregulated gene pathways relating to innate immunity, haemostasis and metabolism, and downregulated adaptive immune pathways. These changes persisted at the day of pneumonia diagnosis (median 6 days, compared to day 7 in controls). In the longitudinal comparison, cases exhibited enhanced upregulation of innate immunity, adaptive immunity and haemostasis pathways, along with enhanced downregulation of metabolism pathways, relative to controls (all p<0.00001, except haemostasis p<0.05). These findings were largely externally validated. Cases had higher quantitative sepsis response signature scores (p<0.001), reflective of immune dysregulation.

conclusionPatients developing ICU-acquired pneumonia exhibit distinct blood transcriptional responses shortly after ICU admission and in the subsequent path to pneumonia, suggestive of broad immune dysfunction with both immunosuppressive and inflammatory features.

Indexed as

Healthcare-Associated PneumoniaIntensive Care UnitsPneumoniaAdaptive ImmunityAdultAgedCase-Control StudiesEuropeFemaleGene Expression ProfilingHumansImmunity, InnateLongitudinal StudiesMaleMiddle AgedRespiration, Artificial

Identifiers

PMID39848701
PMCPMC12018758

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.