Evidence map›Paper›PMID 39859269›Full record

ArticleInternational journal of molecular sciences2025

Diverse Interactions of Sterols with Amyloid Precursor Protein Transmembrane Domain Can Shift Distribution Between Alternative Amyloid-β Production Cascades in Manner Dependent on Local Lipid Environment.

Pavel E Volynsky, Anatoly S Urban, Konstantin V Pavlov, Yaroslav V Bershatsky, Olga V Bocharova, Anastasia K Kryuchkova, Veronika V Zlobina, Alina A Gavrilenkova, Sofya M Dolotova, Anna V Kamynina and 7 more

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Pavel E VolynskyShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997 Moscow, Russia.ORCID 0000-0002-0471-4188
Anatoly S UrbanShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997 Moscow, Russia.ORCID 0000-0001-6372-758X
Konstantin V PavlovMoscow Center of Advanced Studies, 123592 Moscow, Russia.ORCID 0000-0003-1637-8000
Yaroslav V BershatskyShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997 Moscow, Russia.ORCID 0000-0001-9863-4666
Olga V BocharovaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997 Moscow, Russia.
Anastasia K KryuchkovaMoscow Center of Advanced Studies, 123592 Moscow, Russia.ORCID 0009-0009-2983-8118
Veronika V ZlobinaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997 Moscow, Russia.
Alina A GavrilenkovaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997 Moscow, Russia.ORCID 0000-0003-2627-1426
Sofya M DolotovaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997 Moscow, Russia.
Anna V KamyninaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997 Moscow, Russia.
Olga T ZangievaPirogov National Medical and Surgical Center, 105203 Moscow, Russia.
Amir TaldaevMoscow Center of Advanced Studies, 123592 Moscow, Russia.
Oleg V BatishchevFrumkin Institute of Physical Chemistry and Electrochemistry RAS, 119071 Moscow, Russia.ORCID 0000-0002-9581-2233
Ivan S OkhrimenkoMoscow Center of Advanced Studies, 123592 Moscow, Russia.
Tatiana V RakitinaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997 Moscow, Russia.ORCID 0000-0002-3096-8659
Roman G EfremovShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997 Moscow, Russia.ORCID 0000-0002-5474-4721
Eduard V BocharovShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997 Moscow, Russia.ORCID 0000-0002-3635-1609

Funding

Ministry of Science and Higher Education of the Russian Federation within the framework of state support for the creation and development of World-Class Research Centers 'Digital Bi-odesign and Personalized Healthcare' 075-15-2022-305Russian Science Foundation 23-74-00024
6 · The paper itself

Abstract

Alzheimer's disease (AD) pathogenesis is correlated with the membrane content of various lipid species, including cholesterol, whose interactions with amyloid precursor protein (APP) have been extensively explored. Amyloid-β peptides triggering AD are products of APP cleavage by secretases, which differ depending on the APP and secretase location relative to ordered or disordered membrane microdomains. We used high-resolution NMR to probe the interactions of the cholesterol analog with APP transmembrane domain in two membrane-mimicking systems resembling ordered or perturbed lipid environments (bicelles/micelles). In bicelles, spin-labeled sterol interacted with the peptide near the amphiphilic juxtamembrane region and N-terminal part of APP transmembrane helix, as described earlier for cholesterol. Upon transition into micellar environment, another interaction site appeared where sterol polar head was buried in the hydrophobic core near the hinge region. In MD simulations, sterol moved between three interaction sites, sliding along the polar groove formed by glycine residues composing the dimerization interfaces and flexible hinge of the APP transmembrane domain. Because the lipid environment modulates interactions, the role of lipids in the AD pathogenesis is defined by the state of the entire lipid subsystem rather than the effects of individual lipid species. Cholesterol can interplay with other lipids (polyunsaturated, gangliosides, etc.), determining the outcome of amyloid-β production cascades.

Indexed as

Amyloid beta-PeptidesAmyloid beta-Protein PrecursorSterolsAlzheimer DiseaseCholesterolHumansMicellesMolecular Dynamics SimulationProtein BindingProtein DomainsAmyloid beta-PeptidesAmyloid beta-Protein PrecursorCholesterolMicellesSterolsalternative cleavage cascadesAlzheimer’s diseaseamyloid precursor proteincholesterollipid membrane statemolecular dynamicsNMRtransmembrane domain

Identifiers

PMID39859269
PMCPMC11764862

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.