Evidence map›Paper›PMID 39859530›Full record

ArticleInternational journal of molecular sciences2025

A Haplotype GWAS in Syndromic Familial Colorectal Cancer.

Litika Vermani, Johanna Samola Winnberg, Wen Liu, Veronika Soller, Tilde Sjödin, Mats Lindblad, Annika Lindblom

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Litika VermaniDepartment of Molecular Medicine and Surgery, Karolinska Institutet, 17176 Stockholm, Sweden.ORCID 0000-0002-3086-5633
Johanna Samola WinnbergDivision of Surgery, Department of Clinical Science Intervention and Technology (CLINTEC), Karolinska Institutet, 17177 Stockholm, Sweden.ORCID 0000-0002-3831-4801
Wen LiuDepartment of Molecular Medicine and Surgery, Karolinska Institutet, 17176 Stockholm, Sweden.
Veronika SollerDepartment of Molecular Medicine and Surgery, Karolinska Institutet, 17176 Stockholm, Sweden.
Tilde SjödinDepartment of Molecular Medicine and Surgery, Karolinska Institutet, 17176 Stockholm, Sweden.
Mats LindbladDivision of Surgery, Department of Clinical Science Intervention and Technology (CLINTEC), Karolinska Institutet, 17177 Stockholm, Sweden.
Annika LindblomDepartment of Molecular Medicine and Surgery, Karolinska Institutet, 17176 Stockholm, Sweden.ORCID 0000-0001-7675-7569

Funding

Cancer Research Funds of Radiumhemmet 221223Stockholm County Council and Karolinska Institutet RS2022-0674Swedish Cancer Society 21 1443 PjSwedish Research Council 2019-01441
6 · The paper itself

Abstract

A previous genome-wide association study (GWAS) in colorectal cancer (CRC) patients with gastric and/or prostate cancer in their families suggested genetic loci with a shared risk for these three cancers. A second haplotype GWAS was undertaken in the same colorectal cancer patients and different controls with the aim of confirming the result and finding novel loci. The haplotype GWAS analysis involved 685 patients with colorectal cancer cases and 1642 healthy controls from Sweden. A logistic regression model was used with a sliding window haplotype approach. Whole-genome and exome sequencing datawere used to find candidate SNPs to be tested in a nested case-control study. In the analysis of 685 colorectal cancer cases and 1642 controls, all ten candidate loci from the previous study were confirmed. Fifty candidate loci were suggested with a

Indexed as

Colorectal NeoplasmsGenetic Predisposition to DiseaseGenome-Wide Association StudyHaplotypesAdultAgedCase-Control StudiesFemaleHumansMaleMiddle AgedPolymorphism, Single NucleotideProstatic NeoplasmsSwedencolorectal cancerexome sequencingfamilialgastric cancergeneticgenome sequencingGWASprostate cancer

Identifiers

PMID39859530
PMCPMC11765965

What Socratic holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.