ArticleNature communications2025
Natural variation of CTB5 confers cold adaptation in plateau japonica rice.
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25 citing papers in PubMed.
- OsERF5 enhances cold tolerance and is associated with GA‑mediated antioxidant defence in rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- OsbHLH6 regulates OsMADS57 and amino acid metabolism to impair cold tolerance in rice.Plant cell reports · 2026Article
- Natural variation in WRKY53 confers cold tolerance at the booting stage between japonica and indica rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Temperature regulation in plants: From molecular mechanisms to climate-resilient crop improvement.Journal of integrative plant biology · 2026Review
- OsMYBAS1 Coordinates ABA/JA Signaling and ROS Homeostasis for Seedling Cold Tolerance of Rice (Oryza sativa L.).Rice (New York, N.Y.) · 2026Article
- The bHLH Transcription FactorPlants (Basel, Switzerland) · 2026Article
- The OsMYB4 transcription factor enables coordinated improvement of grain yield and quality in rice.Nature communications · 2026Article
- Low temperature-induced profiling of transcription and alternative splicing during seed germination in rice.BMC genomics · 2026Article
- OsHOX24 Modulates Grain Size and Salt Tolerance Via OsPP2C09 in Rice.Rice (New York, N.Y.) · 2026Article
- The Rice Cis-Natural Antisense Transcript NAT1850 of Pri-miR1850 Negatively Regulates Cold Tolerance by Repressing NPR3.Plant biotechnology journal · 2026Article
- Discovery of cold tolerance genes and favorable alleles in Kam sweet rice across various growth stages.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- The Pentatricopeptide Repeat Protein OsPPR7 Confers Cold Tolerance at the Booting Stage in Rice by Regulating ABA and ROS Homeostasis.Rice (New York, N.Y.) · 2026Article
- Editorial for Special Issue "Functional Genomics and Comparative Genomics Analysis in Plants, 3rd Edition".Current issues in molecular biology · 2026Article
- Transcriptome Analysis IdentifiesPlants (Basel, Switzerland) · 2026Article
- The Transcription Factors NFYA1 and GBF3 Jointly Regulate CHS2 to Promote Tangeretin Accumulation and Cold Tolerance in Citrus.Plant biotechnology journal · 2026Article
- Molecular mechanisms of plant freezing tolerance: from cold signal perception to adaptive responses.Frontiers in plant science · 2026Review
- Combining QTL mapping and transcriptomics to identify candidate genes for cold tolerance during the budding and seedling stages in rice.BMC genomics · 2025Article
- The Transcription FactorPlants (Basel, Switzerland) · 2025Article
- Translational insights into abiotic interactions: From Arabidopsis to crop plants.The Plant cell · 2025Review
- Rice-specific miR1850.1 targets NPR3 to regulate cold stress response.Plant communications · 2025Article
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Authors and funding
19 authors.
Haifeng Guo *Frontiers Science Center for Molecular Design Breeding, Beijing Key Laboratory of Crop Genetic Improvement, College of Agronomy and Biotechnology, China Agricultural University, Beijing, China.
Shilei Gao *Frontiers Science Center for Molecular Design Breeding, Beijing Key Laboratory of Crop Genetic Improvement, College of Agronomy and Biotechnology, China Agricultural University, Beijing, China.
Huahui LiInstitute of Food Crop Research, Yunnan Academy of Agricultural Sciences, Kunming, China.
Jiazhen YangBiotechnology and Genetic Resources Institute, Yunnan Academy of Agricultural Sciences, Kunming, China.
Jin LiFrontiers Science Center for Molecular Design Breeding, Beijing Key Laboratory of Crop Genetic Improvement, College of Agronomy and Biotechnology, China Agricultural University, Beijing, China.
Yunsong GuFrontiers Science Center for Molecular Design Breeding, Beijing Key Laboratory of Crop Genetic Improvement, College of Agronomy and Biotechnology, China Agricultural University, Beijing, China.
Qijin LouFrontiers Science Center for Molecular Design Breeding, Beijing Key Laboratory of Crop Genetic Improvement, College of Agronomy and Biotechnology, China Agricultural University, Beijing, China.
Runbin SuFrontiers Science Center for Molecular Design Breeding, Beijing Key Laboratory of Crop Genetic Improvement, College of Agronomy and Biotechnology, China Agricultural University, Beijing, China.
Wei YeFrontiers Science Center for Molecular Design Breeding, Beijing Key Laboratory of Crop Genetic Improvement, College of Agronomy and Biotechnology, China Agricultural University, Beijing, China.
Andong ZouFrontiers Science Center for Molecular Design Breeding, Beijing Key Laboratory of Crop Genetic Improvement, College of Agronomy and Biotechnology, China Agricultural University, Beijing, China.
Yulong WangFrontiers Science Center for Molecular Design Breeding, Beijing Key Laboratory of Crop Genetic Improvement, College of Agronomy and Biotechnology, China Agricultural University, Beijing, China.
Xingming SunFrontiers Science Center for Molecular Design Breeding, Beijing Key Laboratory of Crop Genetic Improvement, College of Agronomy and Biotechnology, China Agricultural University, Beijing, China.
Zhanying ZhangFrontiers Science Center for Molecular Design Breeding, Beijing Key Laboratory of Crop Genetic Improvement, College of Agronomy and Biotechnology, China Agricultural University, Beijing, China.ORCID http://orcid.org/0000-0001-8433-1904
Hongliang ZhangFrontiers Science Center for Molecular Design Breeding, Beijing Key Laboratory of Crop Genetic Improvement, College of Agronomy and Biotechnology, China Agricultural University, Beijing, China.
Yawen ZengBiotechnology and Genetic Resources Institute, Yunnan Academy of Agricultural Sciences, Kunming, China.
Pingrong YuanInstitute of Food Crop Research, Yunnan Academy of Agricultural Sciences, Kunming, China.
Youliang PengMinistry of Agriculture Key Laboratory of Pest Monitoring and Green Management, College of Plant Protection, China Agricultural University, Beijing, China.ORCID http://orcid.org/0000-0001-6360-3034
Zichao LiFrontiers Science Center for Molecular Design Breeding, Beijing Key Laboratory of Crop Genetic Improvement, College of Agronomy and Biotechnology, China Agricultural University, Beijing, China. lizichao@cau.edu.cn.ORCID http://orcid.org/0000-0002-3186-1132
Jinjie LiFrontiers Science Center for Molecular Design Breeding, Beijing Key Laboratory of Crop Genetic Improvement, College of Agronomy and Biotechnology, China Agricultural University, Beijing, China. lijinjie@cau.edu.cn.
Funding
National Natural Science Foundation of China (National Science Foundation of China) 32372080
Abstract
During cold acclimation in high-latitude and high-altitude regions, japonica rice develops enhanced cold tolerance, but the underlying genetic basis remains unclear. Here, we identify CTB5, a homeodomain-leucine zipper (HD-Zip) transcription factor that confers cold tolerance at the booting stage in japonica rice. Four natural variations in the promoter and coding regions enhance cold response and transcriptional regulatory activity, enabling the favorable CTB5
Indexed as
AcclimatizationOryzaPlant ProteinsTranscription FactorsAdaptation, PhysiologicalAllelesCold-Shock ResponseCold TemperatureGene Expression Regulation, PlantGenetic VariationGibberellinsPromoter Regions, GeneticReactive Oxygen SpeciesGibberellinsPlant ProteinsReactive Oxygen SpeciesTranscription Factors
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LicenceCC BY-NC-ND
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