Evidence map›Paper›PMID 39885189›Full record

ArticleScientific data2025

High-fidelity annotated triploid genome of the quarantine root-knot nematode, Meloidogyne enterolobii.

Marine Poullet, Hemanth Konigopal, Corinne Rancurel, Marine Sallaberry, Celine Lopez-Roques, Ana Paula Zotta Mota, Joanna Lledo, Sebastian Kiewnick, Etienne G J Danchin

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Intrinsic host range of the root-knot nematodeFrontiers in plant science · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Marine PoulletInstitut Sophia Agrobiotech, INRAE, Université Côte d'Azur, CNRS, 400 routes des Chappes, 06903, Sophia-Antipolis, France. poullet.m@hotmail.fr.ORCID http://orcid.org/0000-0003-2514-2024
Hemanth KonigopalJulius Kühn-Institut, Institute for Plant Protection in Field Crops and Grassland, Messeweg 11-12, 38104, Braunschweig, Germany.
Corinne RancurelInstitut Sophia Agrobiotech, INRAE, Université Côte d'Azur, CNRS, 400 routes des Chappes, 06903, Sophia-Antipolis, France.ORCID http://orcid.org/0000-0001-9355-5491
Marine SallaberryINRAE, GeT_PlaGe, Genotoul, 31326, Castanet - Tolosan, France.
Celine Lopez-RoquesINRAE, GeT_PlaGe, Genotoul, 31326, Castanet - Tolosan, France.ORCID http://orcid.org/0000-0003-2529-7958
Ana Paula Zotta MotaInstitut Sophia Agrobiotech, INRAE, Université Côte d'Azur, CNRS, 400 routes des Chappes, 06903, Sophia-Antipolis, France.
Joanna LledoINRAE, GeT_PlaGe, Genotoul, 31326, Castanet - Tolosan, France.
Sebastian KiewnickJulius Kühn-Institut, Institute for Plant Protection in Field Crops and Grassland, Messeweg 11-12, 38104, Braunschweig, Germany.
Etienne G J DanchinInstitut Sophia Agrobiotech, INRAE, Université Côte d'Azur, CNRS, 400 routes des Chappes, 06903, Sophia-Antipolis, France. etienne.danchin@inrae.fr.ORCID http://orcid.org/0000-0003-4146-5608

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Root-knot nematodes (RKN) of the genus Meloidogyne are obligatory plant endoparasites that cause substantial economic losses to agricultural production and impact the global food supply. These plant parasitic nematodes belong to the most widespread and devastating genus worldwide, yet few measures of control are available. The most efficient way to control RKN is deployment of resistance genes in plants. However, current resistance genes that control other Meloidogyne species are mostly inefficient on Meloidogyne enterolobii. Consequently, M. enterolobii was listed as a European Union quarantine pest requiring regulation. To gain insight into the molecular characteristics underlying its parasitic success, exploring the genome of M. enterolobii is essential. Here, we report a high-quality genome assembly of M. enterolobii using the high-fidelity long-read sequencing technology developed by Pacific Biosciences, combined with a gap-aware sequence transformer, DeepConsensus. The resulting triploid genome assembly spans 285.4 Mb with 556 contigs, a GC% of 30 ± 0.042 and an N50 value of 2.11 Mb, constituting a useful platform for comparative, population and functional genomics.

Indexed as

Genome, HelminthTriploidyTylenchoideaAnimalsPlant DiseasesPlant Roots

Identifiers

PMID39885189
PMCPMC11782629

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.