Evidence map›Paper›PMID 39887777›Full record

ArticlePlant, cell & environment2025

Plasticity of Root System Architecture and Whole Transcriptome Responses Underlying Nitrogen Deficiency Tolerance Conferred by a Wild Emmer Wheat QTL.

Nikolai Govta, Liubov Govta, Hanan Sela, Gadi Peleg, Assaf Distelfeld, Tzion Fahima, Diane M Beckles, Tamar Krugman

Abstract read
In one paragraph

Article in Plant, cell & environment, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Nikolai GovtaDepartment of Evolutionary and Environmental Biology, and Institute of Evolution, University of Haifa, Haifa, Israel.ORCID http://orcid.org/0000-0001-6850-6911
Liubov GovtaDepartment of Evolutionary and Environmental Biology, and Institute of Evolution, University of Haifa, Haifa, Israel.ORCID http://orcid.org/0000-0002-0989-902X
Hanan SelaDepartment of Evolutionary and Environmental Biology, and Institute of Evolution, University of Haifa, Haifa, Israel.ORCID http://orcid.org/0000-0002-4218-4376
Gadi PelegPhenoRoot Ltd., Rehovot, Israel.ORCID http://orcid.org/0009-0005-9623-274X
Assaf DistelfeldDepartment of Evolutionary and Environmental Biology, and Institute of Evolution, University of Haifa, Haifa, Israel.ORCID http://orcid.org/0000-0003-1777-3053
Tzion FahimaDepartment of Evolutionary and Environmental Biology, and Institute of Evolution, University of Haifa, Haifa, Israel.ORCID http://orcid.org/0000-0001-5555-0040
Diane M BecklesDepartment of Plant Sciences, University of California, Davis, California, USA.ORCID http://orcid.org/0000-0001-6336-1186
Tamar KrugmanDepartment of Evolutionary and Environmental Biology, and Institute of Evolution, University of Haifa, Haifa, Israel.ORCID http://orcid.org/0000-0002-0339-8515

Funding

This study was supported by the United States-Israel Binational Agricultural Research and Development Fund (BARD) Projects IS-5198-19, US-5515-22C, and the Environmental Molecular Sciences Laboratory (EMSL) project 60182.
6 · The paper itself

Abstract

Our aim was to elucidate mechanisms underlying nitrogen (N)-deficiency tolerance in bread wheat (cultivar Ruta), conferred by a wild emmer wheat QTL (WEW; IL99). We hypothesised that the tolerance in IL99 is driven by enhanced N-uptake through modification of root system architecture (RSA) underscored by transcriptome modifications. Severe N-deficiency (0.1 N for 26 days) triggered significantly higher plasticity in IL99 compared to Ruta by modifying 16 RSA traits; nine of which were IL99-specific. The change in root growth in IL99 was collectively characterised by a transition in root orientation from shallow to steep, increased root number and length, and denser networks, enabling nutrient acquisition from a larger volume and deeper soil layers. Gene ontology and KEGG-enrichment analyses highlighted IL99-specific pathways and candidate genes elevated under N-deficiency. This included Jasmonic acid metabolism, a key hormone mediating RSA plasticity (AOS1, TIFY, MTB2, MYC2), and lignification-mediated root strengthening (CYP73A, 4CL). 'N-metabolism' was identified as a main shared pathway to IL99 and Ruta, with enhanced nitrate uptake predominant in IL99 (NRT2.4), while remobilisation was the main strategy in Ruta (NRT2.3). These findings provide novel insights into wheat plasticity response underlying tolerance to N-deficiency and demonstrate the potential of WEW for improving N-uptake under suboptimal conditions.

Indexed as

NitrogenPlant RootsQuantitative Trait LociTranscriptomeTriticumGene Expression Regulation, PlantNitrogenabiotic stressnitrogen‐deficiency toleranceplasticityRNA‐seqroot system architecture (RSA)wild emmer wheat (WEW)

Identifiers

PMID39887777
PMCPMC11893928

What Socratic holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.