Evidence map›Paper›PMID 39896484›Full record

ArticlebioRxiv : the preprint server for biology2025

Investigation of All Disease-Relevant Lysine Acetylation Sites in α-Synuclein Enabled by Non-canonical Amino Acid Mutagenesis.

Marie Shimogawa, Ming-Hao Li, Grace Shin Hye Park, Jennifer Ramirez, Hudson Lee, Paris R Watson, Swati Sharma, Zongtao Lin, Chao Peng, Virginia M-Y Lee and 5 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Marie ShimogawaDepartment of Chemistry, School of Arts and Sciences, University of Pennsylvania, 231 South 34th Street, Philadelphia, PA 19104, USA.ORCID 0000-0002-8471-9375
Ming-Hao LiDepartment of Biochemistry, Weill Cornell Medicine, 1300 York Avenue, New York, NY, 10065, USA.
Grace Shin Hye ParkGraduate Group in Biochemistry, Biophysics, and Chemical Biology, Perelman School of Medicine, University of Pennsylvania, 206 Anatomy-Chemistry Building, 3620 Hamilton Walk, Philadelphia, PA 19104, USA.
Jennifer RamirezGraduate Group in Biochemistry, Biophysics, and Chemical Biology, Perelman School of Medicine, University of Pennsylvania, 206 Anatomy-Chemistry Building, 3620 Hamilton Walk, Philadelphia, PA 19104, USA.
Hudson LeeDepartment of Biochemistry, Weill Cornell Medicine, 1300 York Avenue, New York, NY, 10065, USA.
Paris R WatsonDepartment of Chemistry, School of Arts and Sciences, University of Pennsylvania, 231 South 34th Street, Philadelphia, PA 19104, USA.ORCID 0000-0002-6990-525X
Swati SharmaDepartment of Chemistry, School of Arts and Sciences, University of Pennsylvania, 231 South 34th Street, Philadelphia, PA 19104, USA.
Zongtao LinDepartment of Biochemistry and Molecular Biophysics, Washington University in St Louis, 4523 Clayton Ave, St Louis, MO 63130, USA.
Chao PengDepartment of Neurology, David Geffen School of Medicine, University of California - Los Angeles, 710 Westwood Plaza, Room C-224, Los Angeles, CA 90095, USA.
Virginia M-Y LeeDepartment of Pathology and Laboratory Medicine, Center for Neurodegenerative Disease Research, University of Pennsylvania, 3600 Spruce Street, Philadelphia, PA 19104, USA.
Benjamin A GarciaDepartment of Biochemistry and Molecular Biophysics, Washington University in St Louis, 4523 Clayton Ave, St Louis, MO 63130, USA.
David W ChristiansonDepartment of Chemistry, School of Arts and Sciences, University of Pennsylvania, 231 South 34th Street, Philadelphia, PA 19104, USA.ORCID 0000-0002-0194-5212
Elizabeth RhoadesDepartment of Chemistry, School of Arts and Sciences, University of Pennsylvania, 231 South 34th Street, Philadelphia, PA 19104, USA.ORCID 0000-0002-1741-0650
David EliezerDepartment of Biochemistry, Weill Cornell Medicine, 1300 York Avenue, New York, NY, 10065, USA.ORCID 0000-0002-1311-7537
E James PeterssonDepartment of Chemistry, School of Arts and Sciences, University of Pennsylvania, 231 South 34th Street, Philadelphia, PA 19104, USA.ORCID 0000-0003-3854-9210

Funding

Research Education ComponentP30AG066444 · NIA · WASHINGTON UNIVERSITY · PI Susan Lynn Stark · 2020 to 2026
$28.7M
Structure and Function of MetalloenzymesR01GM049758 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI CHRISTIANSON, DAVID W · 1994 to 2025
$7.6M
Structure and Function of Protein Disorder in Membrane Trafficking and OrganizationR35GM136686 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI ELIEZER, DAVID · 2020 to 2025
$4.5M
Quantitative mass spectrometry for comprehending epigenetic mechanisms in a new underlying neurological developmental disorderR01HD106051 · NICHD · WASHINGTON UNIVERSITY · PI Benjamin A Garcia · 2022 to 2026
$2.6M
A Mass Spectrometry Approach to the Genetic and Epigenetic Mechanisms Controlling Neuronal IdentityR01NS111997 · NINDS · WEILL MEDICAL COLL OF CORNELL UNIV · PI DAHMANE, NADIA, GARCIA, BENJAMIN A · 2020 to 2024
$2.6M
Structure and Function of TauRF1AG066493 · NIA · WEILL MEDICAL COLL OF CORNELL UNIV · PI ELIEZER, DAVID · 2020 to 2020
$2.4M
Predoctoral Training at the Chemistry-Biology InterfaceT32GM133398 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI Ronen Marmorstein, Ernest James Petersson · 2020 to 2026
$2.4M
Studying Aggregation in Neurodegenerative Disease using Synthetic ProteinsRF1NS103873 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI PETERSSON, ERNEST JAMES · 2023 to 2023
$1.8M
Combinatorial effects of PTMs on a-Synuclein structure, function and aggregationRF1NS125770 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI PETERSSON, ERNEST JAMES, RHOADES, ELIZABETH · 2022 to 2022
$1.7M
Development and Application of Chemical Biology Approaches for Understanding Protein ArginylationR01HL177113 · NHLBI · WASHINGTON UNIVERSITY · PI Benjamin A Garcia, Zongtao Lin · 2025 to 2026
$1.2M
Bruker RapifleX MALDI TOF/TOF Mass SpectrometerS10OD030460 · OD · UNIVERSITY OF PENNSYLVANIA · PI PETERSSON, ERNEST JAMES · 2021 to 2021
$881k
Acquisition of a Cold Probe and Console for a 600MHz NMR spectrometerS10OD016320 · OD · WEILL MEDICAL COLL OF CORNELL UNIV · PI BRACKEN, WILLIAM C · 2013 to 2013
$600k
NHLBI NIH HHS R01 HL177113NIA NIH HHS P30 AG066444NIA NIH HHS RF1 AG066493NICHD NIH HHS R01 HD106051NIGMS NIH HHS R01 GM049758NIGMS NIH HHS R35 GM136686NIGMS NIH HHS T32 GM133398NIH HHS S10 OD016320NIH HHS S10 OD028556NIH HHS S10 OD030460NINDS NIH HHS R01 NS111997NINDS NIH HHS RF1 NS103873NINDS NIH HHS RF1 NS125770
6 · The paper itself

Abstract

Aggregates of α-synuclein (αS) are hallmarks of synucleinopathies, including Parkinson's Disease (PD) and Multiple System Atrophy (MSA). We have recently shown that αS lysine acetylation in the soluble monomer pool varies between healthy controls, PD, and MSA patients. To study the effects of lysine acetylation at all disease-relevant sites of αS, we first compared production of acetylated αS through either native chemical ligation or non-canonical amino acid (ncAA) mutagenesis. Since yields were comparable, ncAA mutagenesis was deemed superior for scanning many acetylation sites. We expressed and purified 12 disease-relevant variants and studied their binding to membranes as well as their aggregation propensities, and found that acetylation of lysine 12, 43, and 80 had particularly strong effects. To understand the implications for acetylation of monomeric αS found in healthy cells, we performed NMR experiments to study protein conformation and fluorescence correlation spectroscopy experiments to quantify lipid binding. We also investigated the effects of acetylation at lysine 12, 43, and 80 on fibril seeding in neurons. Collectively, our biochemical and cell biological investigations indicated that acetylation of K

Identifiers

PMID39896484
PMCPMC11785115

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.