Evidence map›Paper›PMID 39904385›Full record

ArticleProceedings. Biological sciences2025

Circatidal control of gene expression in the deep-sea hot vent shrimp

Hongyin Zhang, Takuya Yahagi, Norio Miyamoto, Chong Chen, Qingqiu Jiang, Pei-Yuan Qian, Jin Sun

Abstract read
In one paragraph

Article in Proceedings. Biological sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Evidence for ~12-h ultradian gene programs in humans.Npj biological timing and sleep · 2024
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Hongyin Zhang *Key Laboratory of Evolution and Marine Biodiversity (Ministry of Education), Institute of Evolution and Marine Biodiversity, Ocean University of China, Qingdao 266003, People's Republic of China.ORCID 0009-0007-9594-4117
Takuya Yahagi *Department of Marine Ecosystem Science, Atmosphere and Ocean Research Institute, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8564, Japan.ORCID 0000-0001-9453-4502
Norio MiyamotoX-STAR, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka, Kanagawa 237-0061, Japan.
Chong ChenX-STAR, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka, Kanagawa 237-0061, Japan.ORCID 0000-0002-5035-4021
Qingqiu JiangKey Laboratory of Evolution and Marine Biodiversity (Ministry of Education), Institute of Evolution and Marine Biodiversity, Ocean University of China, Qingdao 266003, People's Republic of China.
Pei-Yuan QianDepartment of Ocean Science, Hong Kong University of Science and Technology, Clear Water Bay Road, Hong Kong.ORCID 0000-0003-4074-9078
Jin SunKey Laboratory of Evolution and Marine Biodiversity (Ministry of Education), Institute of Evolution and Marine Biodiversity, Ocean University of China, Qingdao 266003, People's Republic of China.ORCID 0000-0001-8002-6881

Funding

Fundamental Research Funds for the Central UniversitiesInterRidgeMajor Basic and Applied Research Projects of Guangdong ProvinceNatural Science Foundation of Shandong ProvinceScience and Technology Innovation Project of Laoshan LaboratorySouthern Marine Science and Engineering Guangdong Laboratory (Guangzhou)Young Taishan Scholars Program of Shandong Province
6 · The paper itself

Abstract

Biological clocks are a ubiquitous feature of all life, enabling the use of natural environmental cycles to track time. Although studies on circadian rhythms have contributed greatly to the knowledge of chronobiology, biological rhythms in dark biospheres such as the deep sea remain poorly understood. Here, based on a free-running experiment in the laboratory, we reveal potentially endogenous rhythms in the gene expression of the deep-sea hydrothermal vent shrimp

Indexed as

Biological ClocksDecapodaGene ExpressionGene Expression RegulationAnimalsCircadian RhythmHydrothermal VentsTranscriptomeadaptationbiological rhythmdeep seahydrothermal ventRimicaris leurokolostranscriptomics

Identifiers

PMID39904385
PMCPMC11793976

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.