Evidence map›Paper›PMID 39907936›Full record

ArticleJournal of assisted reproduction and genetics2025

Dimethyl sulfoxide-induced DNA demethylation during vitrification of early cleavage-stage embryos and possible countermeasures.

M Shida, J Ito, Y Inoue, S Hara, K Shirasuna, H Iwata

Abstract read
In one paragraph

Article in Journal of assisted reproduction and genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Maternal O-GlcNAc Transferase Is Required for the Asymmetry of Epigenetic Modifications in Mouse Zygotes.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
    Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

M ShidaDeportment of Animal Science, Tokyo University of Agriculture, Funako 1737, Atsugi City, Japan.
J ItoDeportment of Animal Science, Tokyo University of Agriculture, Funako 1737, Atsugi City, Japan.
Y InoueDeportment of Animal Science, Tokyo University of Agriculture, Funako 1737, Atsugi City, Japan.
S HaraDeportment of Animal Science, Tokyo University of Agriculture, Funako 1737, Atsugi City, Japan.
K ShirasunaDeportment of Animal Science, Tokyo University of Agriculture, Funako 1737, Atsugi City, Japan.
H IwataDeportment of Animal Science, Tokyo University of Agriculture, Funako 1737, Atsugi City, Japan. h1iwata@nodai.ac.jp.ORCID http://orcid.org/0000-0001-7238-8997

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeDimethyl sulfoxide (DMSO) alters DNA methylation in vitrified-warmed embryos and potentially affects subsequent development. This study aimed to examine possible countermeasures against DMSO-induced demethylation.

methodsIn vitro-produced bovine embryos (8-cell stage) were vitrified using a combination of DMSO and ethylene glycol (EG) or propylene glycol (PG) + EG. After warming, the lipid content and expression levels of 5-methylcytosine (5mC), 5-hydroxymethylcytosine (5hmC), DNMTs, and TETs were examined. In addition, RNA-sequencing was performed on blastocysts derived from the vitrified embryos. Furthermore, the effect of supplementation with a vitrification medium containing DMSO and N-acetyl-L-cysteine (NAC, 5 mM) on the levels of 5mC in embryos was examined.

resultsVitrification decreased the levels of 5mC and increased the levels of 5hmC in 8-cell stage embryos. Low levels of 5mC persisted until the blastocyst stage in the DMSO group but increased in the PG group. The expression level of TET3A was higher in the DMSO group than in the fresh group, but not in the PG group. Both cryoprotectants reduced the lipid levels in post-warmed 8-cell stage embryos. The addition of NAC ameliorated DMSO-induced demethylation at both the 8-cell and blastocyst stages. RNA-seq analysis revealed that PG-specific pathways included ribosomes and mitochondria and that both DMSO and PG affected cGMP-PGK, MAPK, Wnt, and insulin secretion-related signaling. The K-medoids method predicted that DMSO affected cell adhesion molecules and that MAPK signaling was affected the most.

conclusionsPG and NAC may antagonize DMSO-induced demethylation; however, PG exerts adverse effects on embryos.

Indexed as

BlastocystDimethyl SulfoxideDNA DemethylationDNA MethylationVitrification5-MethylcytosineAnimalsCattleCryopreservationCryoprotective AgentsEmbryo Culture TechniquesEmbryonic DevelopmentEthylene GlycolFemaleFertilization in VitroGene Expression Regulation, Developmental5-MethylcytosineCryoprotective AgentsDimethyl SulfoxideEthylene GlycolPropylene GlycolDimethyl sulfoxideDNA methylationN-acetyl-l-cysteinePropylene glycolVitrification

Identifiers

PMID39907936
PMCPMC12055690

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.