Evidence map›Paper›PMID 39910050›Full record

ArticleNature communications2025

PIN2-mediated self-organizing transient auxin flow contributes to auxin maxima at the tip of Arabidopsis cotyledons.

Patricio Pérez-Henríquez, Shingo Nagawa, Zhongchi Liu, Xue Pan, Marta Michniewicz, Wenxin Tang, Carolyn Rasmussen, Xinping Cui, Jaimie Van Norman, Lucia Strader and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Horticulture research · 2026
    Article
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  3. Article
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Patricio Pérez-HenríquezInstitute of Integrated Genome Biology, and Department of Botany and Plant Sciences, University of California, Riverside, CA, 92521, USA.ORCID http://orcid.org/0000-0003-2761-0004
Shingo NagawaHaixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China.
Zhongchi LiuFaculty of Synthetic Biology, Shenzhen University of Advanced Technology, Shenzhen, Guangdong, China.
Xue PanInstitute of Integrated Genome Biology, and Department of Botany and Plant Sciences, University of California, Riverside, CA, 92521, USA.
Marta MichniewiczDepartment of Biology, Washington University, St. Louis, MO, 63130, USA.
Wenxin TangHaixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China.
Carolyn RasmussenInstitute of Integrated Genome Biology, and Department of Botany and Plant Sciences, University of California, Riverside, CA, 92521, USA.ORCID http://orcid.org/0000-0002-4354-6295
Xinping CuiDepartment of Statistics, University of California, Riverside, CA, 92521, USA.
Jaimie Van NormanInstitute of Integrated Genome Biology, and Department of Botany and Plant Sciences, University of California, Riverside, CA, 92521, USA.ORCID http://orcid.org/0000-0001-8908-6848
Lucia StraderDepartment of Biology, Washington University, St. Louis, MO, 63130, USA.ORCID http://orcid.org/0000-0002-7600-7204
Zhenbiao YangInstitute of Integrated Genome Biology, and Department of Botany and Plant Sciences, University of California, Riverside, CA, 92521, USA. zb.yang1@siat.ac.cn.ORCID http://orcid.org/0000-0001-7482-6540

Funding

Signaling to Cellular Intercalation in ArabidopsisR01GM081451 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI YANG, ZHENBIAO · 2007 to 2014
$2.5M
NIGMS NIH HHS R01 GM081451NSF | Directorate for Mathematical & Physical Sciences | Division of Mathematical Sciences (DMS) 1853698U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) GM081451
6 · The paper itself

Abstract

Directional auxin transport and formation of auxin maxima are critical for embryogenesis, organogenesis, pattern formation, and growth coordination in plants, but the mechanisms underpinning the initiation and establishment of these auxin dynamics are not fully understood. Here we show that a self-initiating and -terminating transient auxin flow along the marginal cells (MCs) contributes to the formation of an auxin maximum at the tip of Arabidopsis cotyledon that globally coordinates the interdigitation of puzzle-shaped pavement cells in the cotyledon epidermis. Prior to the interdigitation, indole butyric acid (IBA) is converted to indole acetic acid (IAA) to induce PIN2 accumulation and polarization in the marginal cells, leading to auxin flow toward and accumulation at the cotyledon tip. Once IAA levels at the cotyledon tip reaches a maximum, it activates pavement cell interdigitation as well as the accumulation of the IBA transporter TOB1 in MCs, which sequesters IBA to the vacuole and reduces IBA availability and IAA levels. The reduction of IAA levels results in PIN2 down-regulation and cessation of the auxin flow. Hence, our results elucidate a self-activating and self-terminating transient polar auxin transport system in cotyledons, contributing to the formation of localized auxin maxima that spatiotemporally coordinate pavement cell interdigitation.

Indexed as

ArabidopsisArabidopsis ProteinsCotyledonIndoleacetic AcidsBiological Transportgamma-Aminobutyric AcidGene Expression Regulation, PlantIndolesArabidopsis ProteinsAT5G57090 protein, Arabidopsisgamma-Aminobutyric Acidindoleacetic acidIndoleacetic Acidsindolebutyric acidIndoles

Identifiers

PMID39910050
PMCPMC11799338

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.