Evidence map›Paper›PMID 39915501›Full record

ArticleNature communications2025

Parameterized resetting model captures dose-dependent entrainment of the mouse circadian clock.

Kosaku Masuda, Ryusuke Yoshimoto, Ruoshi Li, Takeshi Sakurai, Arisa Hirano

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Kosaku MasudaInstitute of Medicine, University of Tsukuba, Tsukuba, Ibaraki, Japan. kosaku.masuda@gmail.com.ORCID http://orcid.org/0000-0003-4680-0305
Ryusuke YoshimotoInstitute of Medicine, University of Tsukuba, Tsukuba, Ibaraki, Japan.ORCID http://orcid.org/0009-0006-6392-7382
Ruoshi LiInstitute of Medicine, University of Tsukuba, Tsukuba, Ibaraki, Japan.ORCID http://orcid.org/0009-0006-0926-9585
Takeshi SakuraiInstitute of Medicine, University of Tsukuba, Tsukuba, Ibaraki, Japan.ORCID http://orcid.org/0000-0003-4474-6253
Arisa HiranoInstitute of Medicine, University of Tsukuba, Tsukuba, Ibaraki, Japan. hirano.arisa.gt@u.tsukuba.ac.jp.ORCID http://orcid.org/0000-0001-9732-6100

Funding

Japan Agency for Medical Research and Development (AMED) JP21zf0127003Japan Agency for Medical Research and Development (AMED) JP21zf0127005Japan Agency for Medical Research and Development (AMED) JP22gm6410030MEXT | Japan Society for the Promotion of Science (JSPS) 22K15157MEXT | Japan Society for the Promotion of Science (JSPS) 22KJ0377
6 · The paper itself

Abstract

The phase response curve (PRC) represents the time-dependent changes in circadian rhythm phase following internal or external stimuli. However, this time dependence complicates PRC measurement and quantification owing to its variable shape with changing stimulus intensity. Our previous work demonstrated that resetting a desynchronized circadian clock (singularity response, SR) simplifies the analysis by requiring only amplitude and phase parameters. In this study, we construct a comprehensive model for phase resetting in the mouse circadian clock by converting PRCs into SR parameters. We analyze single-cell PRCs and show that the SR amplitude parameters for different stimulus concentrations follow the Hill equation. Additionally, the model predicts the combined effects of multiple stimuli and pre-treatment (background) on phase response by simple addition or subtraction of individual SR parameters. Experimental validation using SR measurements in mouse cells and tissues confirms the model's accuracy. This study demonstrates that SRs facilitate PRC quantification and reveal simple rules governing phase resetting properties under various conditions using SR parameters.

Indexed as

Circadian ClocksCircadian RhythmModels, BiologicalAnimalsMaleMiceMice, Inbred C57BLSingle-Cell Analysis

Identifiers

PMID39915501
PMCPMC11802799

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.