Evidence map›Paper›PMID 39919756›Full record

ArticleJournal of industrial microbiology & biotechnology2024

Pseudoalteromonas agarivorans-derived novel ulvan lyase of polysaccharide lyase family 40: Potential application of ulvan and partially hydrolyzed products in cosmetic industry.

Navindu Dinara Gajanayaka, Eunyoung Jo, Minthari Sakethanika Bandara, Svini Dileepa Marasinghe, Sachithra Amarin Hettiarachchi, Sithumini Wijewickrama, Gun-Hoo Park, Chulhong Oh, Youngdeuk Lee

Abstract read
In one paragraph

Article in Journal of industrial microbiology & biotechnology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Navindu Dinara GajanayakaJeju Bio Research Center, Korea Institute of Ocean Science and Technology (KIOST), Jeju-si, Republic of Korea.
Eunyoung JoJeju Bio Research Center, Korea Institute of Ocean Science and Technology (KIOST), Jeju-si, Republic of Korea.
Minthari Sakethanika BandaraJeju Bio Research Center, Korea Institute of Ocean Science and Technology (KIOST), Jeju-si, Republic of Korea.
Svini Dileepa MarasingheJeju Bio Research Center, Korea Institute of Ocean Science and Technology (KIOST), Jeju-si, Republic of Korea.
Sachithra Amarin HettiarachchiDivision of Life Sciences, Korea Polar Research Institute, Incheon, Republic of Korea.
Sithumini WijewickramaJeju Bio Research Center, Korea Institute of Ocean Science and Technology (KIOST), Jeju-si, Republic of Korea.
Gun-Hoo ParkJeju Bio Research Center, Korea Institute of Ocean Science and Technology (KIOST), Jeju-si, Republic of Korea.
Chulhong OhJeju Bio Research Center, Korea Institute of Ocean Science and Technology (KIOST), Jeju-si, Republic of Korea.
Youngdeuk LeeJeju Bio Research Center, Korea Institute of Ocean Science and Technology (KIOST), Jeju-si, Republic of Korea.ORCID 0000-0002-4029-6606

Funding

Korea Institute of Ocean Science and Technology PEA0214
6 · The paper itself

Abstract

Ulvan is a complex sulfated polysaccharide in the cell walls of green algae with extensive applications in food, pharmaceutical, and agricultural industries, prompting extensive studies on ulvan, its oligosaccharides, monosaccharides, and cost-effective depolymerization methods. Our primary objectives were to investigate novel ulvan-utilizing marine bacteria, perform recombinant engineering of genes responsible for ulvan depolymerization, and determine their potential industrial applications. Samples were collected from Jeju Island, which is a South Korean region with significant excessive green algal growth, especially that of Ulva species. The marine bacterium Pseudoalteromonas agarivorans efficiently uses ulvan as its primary carbon source, indicating its potential for ulvan degradation. Through whole-genome sequencing the paul40 gene, which is a polysaccharide lyase family 40 (PL40) member, was identified and subsequently engineered into the pET-16b vector for expression as a His-tagged 95 kDa fusion protein. The ulvan depolymerization process was evaluated and confirmed using various analytical techniques including dinitrosalicylic acid assay, thin-layer chromatography, and gel permeation chromatography. Optimal enzyme activity occurred at 35°C, pH 8.0 in phosphate buffer, and 2.5 mM of NaCl. Furthermore, enzyme characterization and specific activity measurements were performed. This study is the first to report hyaluronidase and elastase inhibition by ulvan and its derivatives along with the characterization of an ulvan lyase enzyme from the PL40 family. ONE-SENTENCE SUMMARY: This study reports the identification and recombinant expression of a novel ulvan-degrading enzyme from Pseudoalteromonas agarivorans, demonstrating its potential for cosmetic industrial applications by revealing ulvan's and partially hydrolyzed ulvan's hyaluronidase and elastase inhibition properties.

Indexed as

Polysaccharide-LyasesPolysaccharidesPseudoalteromonasBacterial ProteinsHydrolysisRepublic of KoreaBacterial ProteinsPolysaccharide-LyasesPolysaccharidesulvanulvan-lyaseElastase inhibitionHyaluronidase inhibitionPolysaccharide lyase family 40 (PL40)

Identifiers

PMID39919756
PMCPMC11835017

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.