Evidence map›Paper›PMID 39922935›Full record

ArticleScientific reports2025

Exploring microbial players for metagenomic profiling of carbon cycling bacteria in sundarban mangrove soils.

Basanta Kumar Das, Ayushman Gadnayak, Hirak Jyoti Chakraborty, Smruti Priyambada Pradhan, Subhashree Subhasmita Raut, Sanjoy Kumar Das

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Basanta Kumar DasICAR-Central Inland Fisheries Research Institute, Barrackpore, Kolkata, 700120, India. basantakumard@gmail.com.
Ayushman GadnayakICAR-Central Inland Fisheries Research Institute, Barrackpore, Kolkata, 700120, India.
Hirak Jyoti ChakrabortyICAR-Central Inland Fisheries Research Institute, Barrackpore, Kolkata, 700120, India.
Smruti Priyambada PradhanICAR-Central Inland Fisheries Research Institute, Barrackpore, Kolkata, 700120, India.
Subhashree Subhasmita RautICAR-Central Inland Fisheries Research Institute, Barrackpore, Kolkata, 700120, India.
Sanjoy Kumar DasICAR-Central Inland Fisheries Research Institute, Barrackpore, Kolkata, 700120, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Sundarbans, the world's largest tidal mangrove forest, acts as a crucial ecosystem for production, conservation, and the cycling of carbon and nitrogen. The study explored the hypothesis that microbial communities in mangrove ecosystems exhibit unique taxonomic and functional traits that play a vital part in carbon cycling and ecosystem resilience. Using metagenomic analysis to evaluate microbial communities in mangrove and non-mangrove environment, evaluating their composition, functional functions, and ecological relevance. The analysis revealed distinct microbial profiles, in mangrove and non-mangrove environments, with bacteria, proteobacteria, and viruses being the most prevalent groups, with varying abundances in each environment. Functional and taxonomical analysis identified genes involved in carbon regulation, including Triacylglycerol lipase, NarG, DsrB, DNA-binding transcriptional dual regulator CRP, Vanillate O-demethylase oxygenase, succinate-CoA ligase, Tetrahydrofolate ligase, Carboxylase, Ribulose-1,5-bisphosphate carboxylase/oxygenase, Glycine hydroxymethyltransferase, MAG: urease, Endosymbiont of Oligobrachia haakonmosbiensis, Ribulose bisphosphate carboxylase, Aconitate hydratase AcnA, and nitrous oxide reductase, suggesting the metabolic versatility of these microbial communities for carbon cycling. The findings emphasize the key role of microbial activity in preserving mangrove ecosystem health and resilience, highlighting the intricate interplay between microbial diversity, functional capabilities, and environmental factors.

Indexed as

BacteriaCarbon CycleMetagenomicsSoil MicrobiologyWetlandsCarbonMetagenomeMicrobiotaCarbonCarbonFunctional genesMangrove soilsMetagenomicsMicrobial

Identifiers

PMID39922935
PMCPMC11807184

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.