Evidence map›Paper›PMID 39928190›Full record

ArticleFunctional & integrative genomics2025

Characterization of 4-coumarate CoA ligase (4CL) gene family and functional study of Sm4CL2/3/7/9 in Salvia miltiorrhiza.

Fan Fu, Huiting Qin, Yujie Xin, Qianmo Li, Heng Kang, Limin Han, Wenping Hua, Xiaoyan Cao

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Article in Functional & integrative genomics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Molecular characterization ofFrontiers in plant science · 2026
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Fan Fu *Key Laboratory of the Ministry of Education for Medicinal Resources and Natural Pharmaceutical Chemistry, National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest of China, Shaanxi Normal University, Xi'an 710119, China.
Huiting Qin *Key Laboratory of the Ministry of Education for Medicinal Resources and Natural Pharmaceutical Chemistry, National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest of China, Shaanxi Normal University, Xi'an 710119, China.
Yujie XinKey Laboratory of the Ministry of Education for Medicinal Resources and Natural Pharmaceutical Chemistry, National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest of China, Shaanxi Normal University, Xi'an 710119, China.
Qianmo LiKey Laboratory of the Ministry of Education for Medicinal Resources and Natural Pharmaceutical Chemistry, National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest of China, Shaanxi Normal University, Xi'an 710119, China.
Heng KangKey Laboratory of the Ministry of Education for Medicinal Resources and Natural Pharmaceutical Chemistry, National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest of China, Shaanxi Normal University, Xi'an 710119, China.
Limin HanCollege of Life Science and Food Engineering, Shaanxi Xueqian Normal University, Xi'an 710100, China.
Wenping HuaCollege of Life Science and Food Engineering, Shaanxi Xueqian Normal University, Xi'an 710100, China. huawenping@126.com.ORCID http://orcid.org/0000-0003-3692-4953
Xiaoyan CaoKey Laboratory of the Ministry of Education for Medicinal Resources and Natural Pharmaceutical Chemistry, National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest of China, Shaanxi Normal University, Xi'an 710119, China. caoxiaoyan@snnu.edu.cn.ORCID http://orcid.org/0000-0002-3188-6663

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The 4-coumarate CoA ligase (4CL, EC6.2.1.12) enzyme is pivotal for the final step of three shared stages in the general phenylpropane metabolic pathway, which plays a critical role in the biosynthesis of a diverse array of metabolites (e.g., phenolic acids, flavonoids, lignin, anthocyanins, and coumarins). Ten 4CL genes have been identified in the genome of Salvia miltiorrhiza (a model medicinal plant), the majority of these genes have not yet been characterized. In this study, the expression profiles of the Sm4CLs gene family were analyzed by qRT-PCR. Among the ten members, Sm4CL7 had the highest expression across various tissues, while Sm4CL5 showed the lowest transcription levels. Notably, Sm4CL2/3/4/6/7/9/10 were significantly responsive to methyl jasmonate (MeJA) treatments. Ten 4CLs were divided into four groups via phylogenetic analysis, while Sm4CL2/3/7/9 that represented each group were selected for further investigation. The GUS staining results of proSm4CL2/3/7/9::GUS transgenic Arabidopsis thaliana were strongly consistent with the qRT-PCR results, and all four Sm4CLs were located in the cytoplasm. Compared with the control, transgenic S. miltiorrhiza plants that overexpressed Sm4CL2/3/7/9 possessed reduced contents of p-coumaric acid and caffeic acid, albeit higher levels of rosmarinic acid and salvianolic acid. In conclusion, this research expands our understanding of the Sm4CL gene family and offers insights into enhancing the quality of S. miltiorrhiza and the production of secondary metabolites through the targeted manipulation of 4CL enzymes.

Indexed as

Coenzyme A LigasesPlant ProteinsSalvia miltiorrhizaAcetatesCinnamatesCyclopentanesDepsidesGene Expression Regulation, PlantMultigene FamilyOxylipinsPhylogenyRosmarinic Acid4-coumarate-CoA ligaseAcetatesCinnamatesCoenzyme A LigasesCyclopentanesDepsidesmethyl jasmonateOxylipinsPlant ProteinsRosmarinic Acid4-coumarate CoA ligaseExpression profilesPhenolic acidsSalvia miltiorrhiza

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.