Evidence map›Paper›PMID 39932052›Full record

ArticleCancer medicine2025

Development and Validation of Prognostic Characteristics Associated With Chromatin Remodeling-Related Genes in Ovarian Cancer.

Guansheng Chen, Wenjing Li, Jiayi Guo, Lingyu Liu, Yongjun Wang

Abstract read
In one paragraph

Article in Cancer medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
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2citing papers in PubMed
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1 · What the graph read from it

What it found

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2 · The registry

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Guansheng ChenDepartment of Gynecology and Obstetrics, Beijing Jishuitan Hospital, Capital Medical University, Beijing, China.
Wenjing LiDepartment of Gynecology and Obstetrics, Beijing Jishuitan Hospital, Capital Medical University, Beijing, China.
Jiayi GuoDepartment of Gynecology and Obstetrics, Beijing Jishuitan Hospital, Capital Medical University, Beijing, China.
Lingyu LiuDepartment of Gynecology and Obstetrics, Beijing Jishuitan Hospital, Capital Medical University, Beijing, China.
Yongjun WangDepartment of Gynecology and Obstetrics, Beijing Jishuitan Hospital, Capital Medical University, Beijing, China.

Funding

This study was supported by the Young Scientists Fund of the National Natural Science Foundation of China 8240111192
6 · The paper itself

Abstract

backgroundOvarian cancer (OC) is a prevalent malignant tumor in the field of gynecology, exhibiting the third highest incidence rate and the highest mortality rate among gynecological tumors. Chromatin remodeling accomplishes specific chromatin condensation at distinct genomic loci and plays an essential role in epigenetic regulation associated with various processes related to cancer development.

methodsDifferentially expressed genes (DEGs) between OC and control samples were screened from The Cancer Genome Atlas (TCGA) and Genotype-Tissue Expression (GTEx) databases, combined with chromatin remodeling-related genes (CRRGs) obtained from the GeneCards database to identify differentially expressed CRRGs (DECRRGs). Enrichment analysis and protein-protein interaction (PPI) network were performed on the DECRRGs. Prognostic genes of OC were screened using univariate Cox and least absolute shrinkage and selection operator (Lasso) analyses. A risk model based on prognostic genes was developed, and the survival probability of OC patients in different risk groups was analyzed by Kaplan-Meier (KM) curve. Finally, the expression levels of prognostic genes were validated by quantitative real-time polymerase chain reaction (qRT-PCR) and western blotting.

resultsIn total, 7 potential prognostic genes associated with the progression of OC patients were obtained, including ARID1B, ATRX, CHRAC1, HDAC1, INO80, MBD2, and SS18. Based on the expression level of prognostic genes, OC patients were divided into high-risk group and low-risk group. Survival analysis indicated that patients classified into the high-risk group had higher mortality rates, which enables this prediction model to be utilized as an independent predictor of OC. Immunocorrelation analysis showed that low-risk patients were more likely to benefit from immunotherapy.

conclusionIn this study, we have identified 7 prognostic genes, including ARID1B, ATRX, CHRAC1, HDAC1, INO80, MBD2, and SS18. Overall, our findings provided a foundation for further comprehension of the potential molecular mechanisms underlying OC pathogenesis and progression.

Indexed as

Biomarkers, TumorChromatin Assembly and DisassemblyOvarian NeoplasmsFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHumansKaplan-Meier EstimatePrognosisProtein Interaction MapsBiomarkers, Tumorchromatin remodelingimmunocorrelationovarian cancerprognostic genes

Identifiers

PMID39932052
PMCPMC11811884

What Socratic holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.