Evidence map›Paper›PMID 39933167›Full record

ArticleJournal of the American Chemical Society2025

Peptide Backbone Editing via Post-Translational O to C Acyl Shift.

Carly K Schissel, Helena Roberts-Mataric, Isaac J Garcia, Hana Kang, Riaz Mowzoon-Mogharrabi, Matthew B Francis, Alanna Schepartz

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Co-Translational Incorporation ofJournal of the American Chemical Society · 2026
    Article
  5. Article
  6. Article
  7. Direct Editing of Cysteine to Electrophilic Alkyl Halides in Peptides.Journal of the American Chemical Society · 2025
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Carly K SchisselDepartment of Chemistry, University of California, Berkeley, California 94720, United States.ORCID 0000-0003-0773-5168
Helena Roberts-MataricDepartment of Chemistry, University of California, Berkeley, California 94720, United States.ORCID 0009-0001-4047-0483
Isaac J GarciaDepartment of Chemistry, University of California, Berkeley, California 94720, United States.ORCID 0000-0002-3266-3998
Hana KangDepartment of Chemistry, University of California, Berkeley, California 94720, United States.
Riaz Mowzoon-MogharrabiDepartment of Chemistry, University of California, Berkeley, California 94720, United States.
Matthew B FrancisDepartment of Chemistry, University of California, Berkeley, California 94720, United States.ORCID 0000-0003-2837-2538
Alanna SchepartzDepartment of Chemistry, University of California, Berkeley, California 94720, United States.ORCID 0000-0003-2127-3932

Funding

High Performance Computing Cluster for Public Health Driven Molecular Science - Core FacilityS10OD023532 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI DURKIN, KATHLEEN A · 2017 to 2017
$434k
Acquisition of a Cryoprobe and Related Accessories for a 600 MHz NMR Spectrometer to Support Health Research Activities at the University of California, BerkeleyS10OD024998 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI HARTWIG, JOHN F · 2018 to 2018
$265k
NIH HHS S10 OD023532NIH HHS S10 OD024998
6 · The paper itself

Abstract

Despite tremendous efforts to engineer translational machinery, replacing the encoded peptide backbone with new-to-nature structures remains a significant challenge. C, H, O, and N are the elements of life, yet ribosomes are capable of forming only C-N bonds as amides, C-O bonds as esters, and C-S bonds as thioesters. There is no current strategy to site-selectively form C-C bonds as ketones embedded in the backbones of ribosomal products. As an alternative to direct ribosomal C-C bond formation, here we report that peptides containing a dehydrolactic acid motif rapidly isomerize to generate backbone-embedded α,γ-diketoamides via a spontaneous formal O to C acyl shift rearrangement. The dehydrolactic acid motif can be introduced into peptides ribosomally or via solid-phase synthesis using α-hydroxyphenylselenocysteine followed by oxidation. Subsequent incubation at physiological pH produces an α,γ-diketoamide that can be diversified using a variety of nucleophiles, including hydrazines and hydroxylamines, to form pyrazoles and oximes, respectively. All of these groups remain embedded directly within the polypeptide backbone. This general strategy for peptide backbone editing, predicated on an intricate cascade of acyl rearrangements, provides the first nonenzymatic example of a C-C bond forming reaction to take place within a peptide backbone. The products so-produced are easily diversified into protein-like materials with backbone-embedded heterocycles. Application of this peptide editing strategy should accelerate the discovery of genetically encoded molecules whose properties more closely resemble those of bioactive natural products.

Indexed as

PeptidesCarbonProtein Processing, Post-TranslationalRibosomesCarbonPeptides

Identifiers

PMID39933167
PMCPMC11869294

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.