Evidence map›Paper›PMID 39939400›Full record

ArticleCommunications biology2025

Metabolic profiling of two white-rot fungi during 4-hydroxybenzoate conversion reveals biotechnologically relevant biosynthetic pathways.

Lummy Maria Oliveira Monteiro, Carlos Del Cerro, Teeratas Kijpornyongpan, Allison Yaguchi, Anna Bennett, Bryon S Donohoe, Kelsey J Ramirez, Alex F Benson, Hugh D Mitchell, Samuel O Purvine and 8 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Communications biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Functional characterization of a novelApplied and environmental microbiology · 2026
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Lummy Maria Oliveira MonteiroRenewable Resources and Enabling Sciences Center, National Renewable Energy Laboratory, Golden, CO, USA.ORCID http://orcid.org/0000-0003-4996-6298
Carlos Del CerroRenewable Resources and Enabling Sciences Center, National Renewable Energy Laboratory, Golden, CO, USA.ORCID http://orcid.org/0000-0003-1693-3895
Teeratas KijpornyongpanRenewable Resources and Enabling Sciences Center, National Renewable Energy Laboratory, Golden, CO, USA.
Allison YaguchiRenewable Resources and Enabling Sciences Center, National Renewable Energy Laboratory, Golden, CO, USA.
Anna BennettRenewable Resources and Enabling Sciences Center, National Renewable Energy Laboratory, Golden, CO, USA.
Bryon S DonohoeBiosciences Center, National Renewable Energy Laboratory, Golden, CO, USA.ORCID http://orcid.org/0000-0002-2272-5059
Kelsey J RamirezRenewable Resources and Enabling Sciences Center, National Renewable Energy Laboratory, Golden, CO, USA.ORCID http://orcid.org/0000-0002-5114-742X
Alex F BensonRenewable Resources and Enabling Sciences Center, National Renewable Energy Laboratory, Golden, CO, USA.
Hugh D MitchellEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, USA.ORCID http://orcid.org/0000-0003-0143-8461
Samuel O PurvineEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, USA.ORCID http://orcid.org/0000-0002-2257-2400
Lye Meng MarkillieEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, USA.ORCID http://orcid.org/0000-0001-8275-4882
Meagan C BurnetEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, USA.
Kent J BloodsworthEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, USA.ORCID http://orcid.org/0000-0002-7596-1565
Benjamin P BowenJoint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0003-1368-3958
Thomas V HarwoodJoint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Katherine LouieJoint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-6787-7558
Trent NorthenJoint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0001-8404-3259
Davinia SalvachúaRenewable Resources and Enabling Sciences Center, National Renewable Energy Laboratory, Golden, CO, USA. davinia.salvachua@nrel.gov.ORCID http://orcid.org/0000-0003-0799-061X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

White-rot fungi are efficient organisms for the mineralization of lignin and polysaccharides into CO

Indexed as

Biosynthetic PathwaysMetabolomeParabensPolyporaceaeBiotechnologyCellobioseMetabolomics4-hydroxybenzoic acidCellobioseParabens

Identifiers

PMID39939400
PMCPMC11822028

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.