Evidence map›Paper›PMID 39939406›Full record

ArticleScientific reports2025

Deciphering the role of cuproptosis in the development of intimal hyperplasia in rat carotid arteries using single cell analysis and machine learning techniques.

Miao He, Hui Chen, Zhengli Liu, Boxiang Zhao, Xu He, Qiujin Mao, Jianping Gu, Jie Kong

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Miao He *Department of General Surgery, Nanjing First Hospital, Nanjing Medical University, Nanjing, 210006, Jiangsu, People's Republic of China.
Hui Chen *Department of Pharmacy, The Affiliated Jiangning Hospital of Nanjing Medical University, Nanjing, 211100, Jiangsu, People's Republic of China.
Zhengli Liu *Department of Interventional Radiology, Nanjing First Hospital, Nanjing Medical University, Nanjing, 210006, Jiangsu, People's Republic of China.
Boxiang ZhaoDepartment of Interventional Radiology, Nanjing First Hospital, Nanjing Medical University, Nanjing, 210006, Jiangsu, People's Republic of China.
Xu HeDepartment of Interventional Radiology, Nanjing First Hospital, Nanjing Medical University, Nanjing, 210006, Jiangsu, People's Republic of China.
Qiujin MaoDepartment of General Surgery, Nanjing First Hospital, Nanjing Medical University, Nanjing, 210006, Jiangsu, People's Republic of China. njsdyyyjrk@163.com.
Jianping GuDepartment of Interventional Radiology, Nanjing First Hospital, Nanjing Medical University, Nanjing, 210006, Jiangsu, People's Republic of China. cjr.gujianping@163.com.
Jie KongDepartment of Interventional Radiology, Nanjing First Hospital, Nanjing Medical University, Nanjing, 210006, Jiangsu, People's Republic of China. kilogram@163.com.

Funding

Jiangsu Medical Association Special Fund Project SYH-3201140-0094(2023041)
6 · The paper itself

Abstract

This study aims to explore the regulatory role of cuproptosis in carotid intimal hyperplasia (IH), providing new insights into its pathophysiological mechanisms and potential diagnostic and therapeutic strategies.

methodsWe downloaded single-cell sequencing and bulk transcriptome data from the GEO database to screen for copper-growth-associated genes (CAGs) using machine-learning algorithms, including Random Forest and Support Vector Machine. After identifying relevant genes, we verified CAGs expression in IH and control groups using a rat model of carotid balloon strain. We analyzed the immune infiltration characteristics of carotid intimal hyperplasia and used electron microscopy to observe mitochondrial structural changes in cuproptosis. Additionally, we performed subgroup analyses of carotid balloon strains. The cuproptosis activity of VSMCs was explored in a single-cell dataset. Immunohistochemistry was applied to validate the expression of CAGs.

resultsBy means of machine learning algorithms, we identified several genes, including Pdhx and Fdx1, as novel therapeutic targets for carotid intimal hyperplasia. Meanwhile, immunohistochemistry results observed decreased expression of Pdhx and Fdx1 in the Neointimal hyperplasia(Neo) group. Immunohistochemical results showed a difference in cellular infiltration between Dendritic cells resting and Mast cells resting. By calculating cuproptosis activity in vascular smooth muscle cells (VSMCs), we found increased cuproptosis activity in normal vascular smooth muscle cells which was also observed in the electron microscopy. Microscopy revealed less mitochondrial swelling characteristic of cuproptosis in Neo group.

conclusionThe CAGs identified may regulate intimal hyperplasia in rat carotid arteries by modulating cuproptosis and represent potential targets for treatment.

Indexed as

Carotid ArteriesCopperMachine LearningNeointimaSingle-Cell AnalysisTunica IntimaAnimalsHyperplasiaMaleRatsRats, Sprague-DawleyTranscriptomeCopperCarotid balloon strainsCuproptosisMachine-learningNeointimal hyperplasiaSingle-cell analysis

Identifiers

PMID39939406
PMCPMC11821821

What Socratic holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.