Evidence map›Paper›PMID 39940790›Full record

ArticleInternational journal of molecular sciences2025

Identification of MCM2-Interacting Proteins Associated with Replication Initiation Using APEX2-Based Proximity Labeling Technology.

Sitong Yao, Zhen Yue, Shaotang Ye, Xiaohuan Liang, Yugu Li, Haiyun Gan, Jiaqi Zhou

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sitong YaoCollege of Veterinary Medicine, South China Agricultural University, 483 Wushan Road, Guangzhou 510642, China.ORCID 0000-0002-1539-9486
Zhen YueGuangdong Provincial Key Laboratory of Synthetic Genomics, Key Laboratory of Quantitative Synthetic Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China.
Shaotang YeCollege of Veterinary Medicine, South China Agricultural University, 483 Wushan Road, Guangzhou 510642, China.ORCID 0000-0001-8891-9756
Xiaohuan LiangCollege of Veterinary Medicine, South China Agricultural University, 483 Wushan Road, Guangzhou 510642, China.
Yugu LiCollege of Veterinary Medicine, South China Agricultural University, 483 Wushan Road, Guangzhou 510642, China.
Haiyun GanGuangdong Provincial Key Laboratory of Synthetic Genomics, Key Laboratory of Quantitative Synthetic Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China.
Jiaqi ZhouGuangdong Provincial Key Laboratory of Synthetic Genomics, Key Laboratory of Quantitative Synthetic Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China.ORCID 0000-0002-9285-8914

Funding

Doublefirst-class discipline promotion project 2023B10564003General Program of the National Natural Science Foundation of China 32070610Guangdong Basic and Applied Basic Research Foundation 2021A1515110377Guangdong Basic and Applied Basic Research Foundation 2021A1515110483Guangdong Province Fund for Distinguished Young Scholars 2021B1515020109Major Program of the National Natural Science Foundation of China 32090031National Key R&D Program of China 2019YFA0903800National Natural Science Foundation of China 32100460National Natural Science Foundation of China for Young Scholars 32000580National Natural Science Foundation of China for Young Scholars 32101178Project funded by China Postdoctoral Science Foundation 2021M693301, 2021M703386Shenzhen Institute of Synthetic Biology Scientific Research Program JCHZ20200005, DWKF20210001, ZTXM20190019Strategic Priority Research Program of the Chinese Academy of Sciences XDB0480000
6 · The paper itself

Abstract

DNA replication is a crucial biological process that ensures the accurate transmission of genetic information, underpinning the growth, development, and reproduction of organisms. Abnormalities in DNA replication are a primary source of genomic instability and tumorigenesis. During DNA replication, the assembly of the pre-RC at the G1-G1/S transition is a crucial licensing step that ensures the successful initiation of replication. Although many pre-replication complex (pre-RC) proteins have been identified, technical limitations hinder the detection of transiently interacting proteins. The APEX system employs peroxidase-mediated rapid labeling with high catalytic efficiency, enabling protein labeling within one minute and detection of transient protein interactions. MCM2 is a key component of the eukaryotic replication initiation complex, which is essential for DNA replication. In this study, we fused MCM2 with enhanced APEX2 to perform in situ biotinylation. By combining this approach with mass spectrometry, we identified proteins proximal to the replication initiation complex in synchronized mouse ESCs and NIH/3T3. Through a comparison of the results from both cell types, we identified some candidate proteins. Interactions between MCM2 and the candidate proteins CD2BP2, VRK1, and GTSE1 were confirmed by bimolecular fluorescence complementation. This research establishes a basis for further study of the component proteins of the conserved DNA replication initiation complex and the transient regulatory network involving its proximal proteins.

Indexed as

DNA ReplicationMinichromosome Maintenance Complex Component 2AnimalsBiotinylationDNA-(Apurinic or Apyrimidinic Site) LyaseEndonucleasesHumansMiceMouse Embryonic Stem CellsMultifunctional EnzymesNIH 3T3 CellsProtein BindingAPEX2 protein, humanDNA-(Apurinic or Apyrimidinic Site) LyaseEndonucleasesMinichromosome Maintenance Complex Component 2Multifunctional EnzymesAPEX2DNA replicationMCM2proximity labeling

Identifiers

PMID39940790
PMCPMC11816892

What Socratic holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.