Evidence map›Paper›PMID 39953608›Full record

ArticleHereditas2025

Identification of endoplasmic reticulum stress and mitochondrial dysfunction related biomarkers in osteoporosis.

Yuxi Chen, Ke Bi, Chunzhi Zhang, Jiaao Gu, Zhange Yu, Jianping Lu, Lei Yu

Abstract read
In one paragraph

Article in Hereditas, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yuxi Chen *Department of Orthopedic Surgery, The First Affiliated Hospital of Harbin Medical University, Harbin, China.
Ke Bi *Department of Orthopedic Surgery, The First Affiliated Hospital of Harbin Medical University, Harbin, China.
Chunzhi ZhangCollege of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China.
Jiaao GuDepartment of Orthopedic Surgery, The First Affiliated Hospital of Harbin Medical University, Harbin, China.
Zhange YuDepartment of Orthopedic Surgery, The First Affiliated Hospital of Harbin Medical University, Harbin, China.
Jianping LuCollege of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China. lujianping1992@163.com.
Lei YuDepartment of Orthopedic Surgery, The First Affiliated Hospital of Harbin Medical University, Harbin, China. hmuyulei@hrbmu.edu.cn.

Funding

the doctoral foundation program of the first affiliated hospital of harbin medical university No. 2023B14the postdoctoral program of heilongjiang province No. LBH-Z22230
6 · The paper itself

Abstract

backgroundEndoplasmic reticulum stress (ERS) and mitochondrial dysfunction (MD) involved in bone metabolism disorders. However, the particular mechanisms of ERS and MD related genes (ERS&MDRGs) in osteoporosis (OP) have not been elucidated. In present study, biomarkers related to ERS and MD in OP were identified.

methodsDifferentially expressed genes (DEGs) were obtained based on GEO dataset. ERS&MDRGs were derived from Genecard database. Initially, ERS&MD related DEGs (ERS&MDRDEGs) were obtained by overlapping DEGs and ERS&MDRGs. The key module was screened by WGCNA. The intersection of ERS&MDRDEGs and key module was screened by machine learning to obtain key genes. Then, receiver operating characteristic curve (ROC) was drawn to calculated diagnostic accuracy of key genes. The ssGSEA and Cibersort algorithms were performed to analyze immune cell infiltration. The miRNA-mRNA-TF network were draw by cytoscape software. Moleculaer docking and DGIdb database were employed for screening potential drugs. Finally, the expression of key genes was verified by qRT-PCR.

resultsThe 122 ERS&MDRDEGs were obtained by preliminary screening. ERS&MDRDEGs were mainly enriched in lipid metabolism, calcium ion transport, and ossification. The 5 key genes were identified, including AAAS, ESR1, SLC12A2, TAF15, and VAMP2. Immune infiltration analysis showed monocyte and macrophage were different between OP and control groups. The miRNA-mRNA-TF regulatory network indicated has-miR-625-5p, has-miR-296-3p, CTCT and EP300 as potential regulatory targets. The 2 potential small molecule drugs, namely bumetanide and elacestrant were screened. The expression of AAAS, ESR1, VAMP2 were higher, and SLC12A2 and TAF15 were lower in OP than control group.

conclusionThis research identified 5 key genes AAAS, ESR1, SLC12A2, TAF15 and VAMP2. Bumetanide and elacestrant were potential drugs. These findings provided valuable insights into the pathophysiology of OP and the development of new therapeutic strategies.

Indexed as

Endoplasmic Reticulum StressMitochondriaOsteoporosisBiomarkersGene Expression ProfilingGene Regulatory NetworksHumansMicroRNAsBiomarkersMicroRNAsBioinformaticsEndoplasmic reticulum stressMachine learningMitochondrial dysfunctionMolecular dockingOsteoporosis

Identifiers

PMID39953608
PMCPMC11827247

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.