Evidence map›Paper›PMID 39955291›Full record

ArticleScientific data2025

A chromosomal-scale reference genome for Rosa hugonis.

Zhenlong Liang, Jia Miao, Hengning Deng, Ruifang Jiao, Liangying Li, Shiqi Li, Zhongyu Tang, Jian Ru, Xinfen Gao

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Genome-wide identification and characterization ofFrontiers in plant science · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Zhenlong LiangKey Laboratory of Mountain Ecological Restoration and Bioresource Utilization, Chengdu Institute of Biology, Chinese Academy of Sciences, P.O. Box 416, Chengdu, Sichuan, 610041, China.
Jia MiaoKey Laboratory of Mountain Ecological Restoration and Bioresource Utilization, Chengdu Institute of Biology, Chinese Academy of Sciences, P.O. Box 416, Chengdu, Sichuan, 610041, China.
Hengning DengKey Laboratory of Mountain Ecological Restoration and Bioresource Utilization, Chengdu Institute of Biology, Chinese Academy of Sciences, P.O. Box 416, Chengdu, Sichuan, 610041, China.
Ruifang JiaoGuangdong Provincial Key Laboratory of Applied Botany, Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems, South China Botanical Garden, Chinese Academy of Sciences, Xingke Road 723, Guangzhou, Guangdong, 510650, China.
Liangying LiKey Laboratory of Mountain Ecological Restoration and Bioresource Utilization, Chengdu Institute of Biology, Chinese Academy of Sciences, P.O. Box 416, Chengdu, Sichuan, 610041, China.
Shiqi LiKey Laboratory of Freshwater Fish Reproduction and Development (Ministry of Education), School of Life Sciences, Southwest University, Chongqing, 400715, China.
Zhongyu TangKey Laboratory of Mountain Ecological Restoration and Bioresource Utilization, Chengdu Institute of Biology, Chinese Academy of Sciences, P.O. Box 416, Chengdu, Sichuan, 610041, China.
Jian RuKey Laboratory for Regional Plants Conservation and Ecological Restoration of Northeast Jiangxi, College of Life Science, Shangrao Normal University, Shangrao, Jiangxi, 334001, China.
Xinfen GaoKey Laboratory of Mountain Ecological Restoration and Bioresource Utilization, Chengdu Institute of Biology, Chinese Academy of Sciences, P.O. Box 416, Chengdu, Sichuan, 610041, China. xfgao@cib.ac.cn.ORCID http://orcid.org/0000-0002-5703-1639

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rosa hugonis is widely distributed in the Hengduan Mountains, Qinling Mountains, and northern China. It is an important candidate species for ecological restoration, given its good adaptability. Here, we present the first high-quality chromosome-level assembly of R. hugonis based on HiFi reads and Hi-C data. The sequencing data were then assembled onto seven pseudochromosomes of R. hugonis. The genome sizes of R. hugonis is 337.92 Mb, with contig N50 length of 26.84 Mb. We annotated 36,218 protein-coding genes in R. hugonis. In summary, the high-quality genome sequences of R. hugonis provide a genetic roadmap for the study of its genetics and species relationships. This will facilitate future genomic comparative studies across more species within Rosa.

Indexed as

Chromosomes, PlantGenome, PlantRosaChinaGenome Size

Identifiers

PMID39955291
PMCPMC11829986

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.